View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10135_low_1 (Length: 621)
Name: NF10135_low_1
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10135_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Complemental strand, 50449704 - 50449099
Alignment:
| Q |
1 |
aaggcatgacctctgtagaatctttgatatnnnnnnn-tcccagctttggttttcattggaccagatggaaaagtcattagtttgagtggacagttcatg |
99 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50449704 |
aaggcatgacctctgtagaatctttgatataaaaaaaatcccagctttggttttcattggaccagatggaaaagtcattagtttgaatggacagttcatg |
50449605 |
T |
|
| Q |
100 |
gtctcctcatacggagcagaagcttttccatttactgaatcgaggataagagatttagaagcggccctgagaaaggaaggagaggctttgcctcaacagg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50449604 |
gtctcctcatacggagcagaagcttttccatttactgaatcgaggataagagatttagaagcggccctgagaaaggaaggagaggctttgcctcaacagg |
50449505 |
T |
|
| Q |
200 |
ttgaggatgtcaagcatgaacatctacttaaattggatatggccaaagcatatgtatgtgattcttgtaagaaacaaggcaagttctggacattctcttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50449504 |
ttgaggatgtcaagcatgaacatctacttaaattggatatggccaaagcatatgtatgtgattcttgtaagaaacaaggcaagttctggacattctcttg |
50449405 |
T |
|
| Q |
300 |
tgatgtttgtgactatgatcttcatcctagttgtcttgagaaggtcaacaatgaccaatgttggtagaaaatagaatcacacaagattgcaaccacttac |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50449404 |
tgatgtttgtgactatgatcttcatcctagttgtcttgagaaggtcaacaatgaccaatgttggtagaaaatagaatcacacaagattgcaaccacttat |
50449305 |
T |
|
| Q |
400 |
attcatgaactactttggtagtgatggacttcaaattgtgaaacataagataatacatgtcttttgttcctatcattaagttgttaaagcctactatttg |
499 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50449304 |
attcatgagctactttggtagtgatggacttcaaattgtgaaacataagataatacatgtcttttgttcctatcattaagttgttaaagcctactatttg |
50449205 |
T |
|
| Q |
500 |
aagggtaagtttttgtaagggaaatgtctgagcggatcaattactctaccatttaatgaaaagtttaggcaaacccttcctttagcagtgtatgggatat |
599 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50449204 |
aaaggtaagtttttgtaagggaaatgtctgagcagatcaattactctaccatttaatgaaaagtttaggcaaacccttcctttagcagtgtatgggatat |
50449105 |
T |
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| Q |
600 |
atttag |
605 |
Q |
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|||||| |
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| T |
50449104 |
atttag |
50449099 |
T |
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