View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10135_low_12 (Length: 278)
Name: NF10135_low_12
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10135_low_12 |
 | |
|
| [»] scaffold0055 (7 HSPs) |
| |
|
| [»] scaffold0052 (8 HSPs) |
| |
|
| [»] scaffold0021 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0055 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 4125 - 4383
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4125 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
4224 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4225 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
4324 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4325 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
4383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 42396 - 42138
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42396 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
42297 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42296 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
42197 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42196 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
42138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 51644 - 51386
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51644 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
51545 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51544 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
51445 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51444 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
51386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 67179 - 66921
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67179 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
67080 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67079 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
66980 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66979 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
66921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 70099 - 69841
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
70099 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
70000 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69999 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
69900 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69899 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
69841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 33088 - 32830
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33088 |
caagtctggtgccagctgccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
32989 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32988 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
32889 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32888 |
agaaattagagtgctcaaagcaagcctacgctctggatacattaacatgggataacacc |
32830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 80592 - 80387
Alignment:
| Q |
73 |
gttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
80592 |
gttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtccgcctatggtgtgcactggttggctcgtcccttctgccggcgatgcgc |
80493 |
T |
|
| Q |
173 |
tcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggat |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80492 |
tcctggccttaattggccgggtcgtgcctccggcgctgttactttgaagaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggat |
80393 |
T |
|
| Q |
273 |
aacacc |
278 |
Q |
| |
|
|||||| |
|
|
| T |
80392 |
aacacc |
80387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 6999 - 6741
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6999 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
6900 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6899 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
6800 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6799 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
6741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 26169 - 25911
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26169 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
26070 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26069 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
25970 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25969 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
25911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 27943 - 27685
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27943 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
27844 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27843 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
27744 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27743 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
27685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 48551 - 48293
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48551 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
48452 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48451 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
48352 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48351 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
48293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 80410 - 80152
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80410 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
80311 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80310 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
80211 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80210 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
80152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 51143 - 50885
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51143 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
51044 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51043 |
cggtccgcctatggtgtgcactggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
50944 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50943 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
50885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 62977 - 63235
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62977 |
caagtctggtgccagctgccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
63076 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63077 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
63176 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
63177 |
agaaattagagtgctcaaagcaagcctacgctctggatacattaacatgggataacacc |
63235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 18671 - 18535
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
18671 |
caagtctggtgccagcagccgcggtcattccagctccaatagcgtatatgtaagttgttgcagttaaaaagctagtagttggacattgggttgggtcgat |
18572 |
T |
|
| Q |
120 |
cggtccgcctatg-gtgtgcaccggttggctcgtccc |
155 |
Q |
| |
|
||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
18571 |
cggtccgcctatgagtgtgcaccggtcggcttgtccc |
18535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 46813 - 46555
Alignment:
| Q |
20 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46813 |
caagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgat |
46714 |
T |
|
| Q |
120 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46713 |
cggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttga |
46614 |
T |
|
| Q |
220 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46613 |
agaaattagagtgctcaaagcaagcctacgctctggatacattagcatgggataacacc |
46555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 13700825 - 13701060
Alignment:
| Q |
19 |
acaagtctggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcga |
118 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
13700825 |
acaagtctggtgctagcagccgcgataattacagctccaatagcgtatatttaagttgttgtagttaaaaagcttgtagttggacctcgggttaggtcga |
13700924 |
T |
|
| Q |
119 |
tcggtccgcctatggtgtgcaccggttggctcgtcccttctgccggcgatgcgctcctggccttaattggccgggtcgtgcctccggcgctgttactttg |
218 |
Q |
| |
|
|||||||||||||||| || |||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |||||||||||| |
|
|
| T |
13700925 |
tcggtccgcctatggtatgtaccgattgactcgtcccttctgccggcgatgcgctctaggccttaatttgccgggtcgtgcctctgacgctgttacttta |
13701024 |
T |
|
| Q |
219 |
aagaaattagagtgctcaaagcaagcctacgctctg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13701025 |
aagaaattagagtgctcaaagcaagcctacactctg |
13701060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 8125612 - 8125751
Alignment:
| Q |
26 |
tggtgccagcagccgcggtaattccagctccaatagcgtatatttaagttgttgcagttaaaaagctcgtagttggaccttgggttgggtcgatcggtcc |
125 |
Q |
| |
|
||||| ||||||| ||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||| || ||| ||| | | ||||| | | |
|
|
| T |
8125612 |
tggtgtcagcagctgcggtaattttagcttcaatagcgtatatttaaattgttgcaattaaaaagctcgtagttgtactttgagttagattgatcgattc |
8125711 |
T |
|
| Q |
126 |
gcctatggtgtgcacc-ggttggctcgtcccttctgccgg |
164 |
Q |
| |
|
| |||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
8125712 |
gtctatagtgtgcaccgggttggctcatcccttctgccgg |
8125751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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