View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10135_low_2 (Length: 407)
Name: NF10135_low_2
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10135_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 52387513 - 52387714
Alignment:
| Q |
17 |
aataataaaataaccaggttgaactactannnnnnnnnnaattaataaaggcaatctaagatttacccattaaatatttgtattttcttattatagccaa |
116 |
Q |
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| T |
52387513 |
aataataaaataaccaggttgaactactatttttt----aattaataaaggcaatctaagatttacccattaaatatttgtattttcttattatagccaa |
52387608 |
T |
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| Q |
117 |
ctccaatatataaataaatggtttagcgtatttatttggcaaattaataattaattttcagatgcaaaaagaagaaattgttggcagttattagcagagt |
216 |
Q |
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| T |
52387609 |
ctccaatatataaataaatggtttagcgtatttatttggcaaattaataattaattttcagatgcaaaaagaagaaattgttggcagttattaagagagt |
52387708 |
T |
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| Q |
217 |
ttaatt |
222 |
Q |
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|||||| |
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| T |
52387709 |
ttaatt |
52387714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 218 - 378
Target Start/End: Original strand, 52391549 - 52391711
Alignment:
| Q |
218 |
taattcatagtatatgctagtttgaacctc-gaatnnnnnnnnnc-ggtaccaggttttagaaaccgcagggaattcgttccattgttttcaaagtctgt |
315 |
Q |
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|||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52391549 |
taattcatagtatatgctagtttgaacctctgaataaaaaaaaaccggtaccaggttttagaaaccgcagggaattcgttccattgttttcaaagtctgt |
52391648 |
T |
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| Q |
316 |
ggactgcctgaacccttaaaatattaattaatttgtctttttattgattcatatccaacgtcc |
378 |
Q |
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| T |
52391649 |
ggactgcctgaacccttaaaatattaattaatttgtctttttattcattcatatccaaagtcc |
52391711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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