View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10135_low_20 (Length: 218)
Name: NF10135_low_20
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10135_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 10825076 - 10824899
Alignment:
| Q |
25 |
atgagaaaatcgtgaaaataggaacaaaatcacagtaattaacaaacattgtttaaatcttgtatgtgtttgtgatgtttttgaatttgttcaggatgaa |
124 |
Q |
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| T |
10825076 |
atgagaaaatcgtgaaaataggaacaaaatcacagtaattaacaaacattgtttaaatcttgtatgtgtttgtgatgtttttgaatttgttcaggatgaa |
10824977 |
T |
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| Q |
125 |
gatgaagtcattggttcggccactcttgacgagacgaggattcagtacgagttctgacaaaatggttgcctctgtgct |
202 |
Q |
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| T |
10824976 |
gatgaagtcattggttcggccactcttgacgagacgaggattcagtacgagttctgacaaaatggttgcctctgtgct |
10824899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 36142810 - 36142977
Alignment:
| Q |
41 |
aataggaacaaaatcacagtaattaacaaacattgtttaaatcttgtatgtgtttgtg------atgtttttgaatttgttcaggatgaagatgaagtca |
134 |
Q |
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| T |
36142810 |
aataggaacaaaatcacggaaattaataaacaatgtttgaatcctctttgtgtttgtgtgtgtgatgtttttgaattcgttcaggatgaagatgatgtca |
36142909 |
T |
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| Q |
135 |
ttggttcggccactcttgacgagacgaggattcagtacgagttctgacaaaatggttgcctctgtgct |
202 |
Q |
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| T |
36142910 |
ttggttcggccactcttgatgaggcgaggattcagtacgagctctgagaaaatggttgcctctgtgct |
36142977 |
T |
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