View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10135_low_3 (Length: 407)
Name: NF10135_low_3
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10135_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 63 - 390
Target Start/End: Original strand, 18079176 - 18079503
Alignment:
| Q |
63 |
gggaaagtggtaaaaaagttaagaatgatgagaatgaactgatcagtgaaaagaattcggaaagtgatgttttatctgatgatagtaaaggttattcttt |
162 |
Q |
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| T |
18079176 |
gggaaaatggtaaaaaagttaagaatgatgagaatgaactgatcagtgaaaagaattcggagagtgatgttttatctgatgatagtaaaggttattcttt |
18079275 |
T |
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| Q |
163 |
aaggactgatagaaaagtgaagctaaaagcattgaacagccgaagcaaaaaataaacatgcggaatccaaaggtgacatcacatgatctctttgctcatt |
262 |
Q |
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| T |
18079276 |
aaggactgatagaaaagtgaagctaaaagcattgaacagccgaagcaaaaaataaacatgcggaatccaaaggtgacatcacatgatctctttgctcatt |
18079375 |
T |
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| Q |
263 |
atatttcgattatgtgtttgtgtgcgcgcgcatgtatatatgtttgaatttggtattacatgtgtttacgtaattgaggttctgtttctcccctttttag |
362 |
Q |
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| T |
18079376 |
atatttcaattatgtgtttgtgtgcgcgcgcatgtatatatgtttgaatttggtattacatgtgtttacgtaattgaggttctgtttctcccctttttag |
18079475 |
T |
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| Q |
363 |
attaactattgatgtgatttgttgtatt |
390 |
Q |
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| T |
18079476 |
attaactattgatgtgatttgttgtatt |
18079503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 4 - 349
Target Start/End: Original strand, 51479061 - 51479401
Alignment:
| Q |
4 |
tggtagaaaaaggaaggtaagttatagttctgaagaaagtgatgaagatgaacaagagggggaaagtggtaaaaaagttaagaatgatgagaatgaactg |
103 |
Q |
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| T |
51479061 |
tggtagaaaaagtaaggtaagttatagttctgaagaaaatgacgaagatgaacaagagggagataatggtaaaaaagttaagattgatgagaatgaactg |
51479160 |
T |
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| Q |
104 |
atcagtgaaaagaattcggaaagtgatgttttatctgatgatagtaaaggttattctttaaggactgatagaaaagtg-aagctaaaagcattgaacagc |
202 |
Q |
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| T |
51479161 |
atcagtgaaaagaatttggaaagtaatgttttatctgatgataataaaggttattctttaaggacctttaaaaaagtgaaagctaaaagcattgaacagc |
51479260 |
T |
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| Q |
203 |
cgaagcaaaaaataaacatgcggaatccaaaggtgacatcacatgatctctttgctcattatatttcgattatgtgtttgtgtgcgcgcgcatgtatata |
302 |
Q |
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| T |
51479261 |
tgaagcaaaaaattaacaaacggaatcctaaggtgacatcacatgatctctttgctcattatatttcaattctgtgtgtatgt------atacatatata |
51479354 |
T |
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| Q |
303 |
tgtttgaatttggtattacatgtgtttacgtaattgaggttctgttt |
349 |
Q |
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| T |
51479355 |
tgtttgaatttggcgttacatgtgtttacgtaattgcggttctgttt |
51479401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 51496033 - 51496194
Alignment:
| Q |
4 |
tggtagaaaaaggaaggtaagttatagttctgaagaaagtgatgaagatgaacaagagggggaaagtggtaaaaaagttaagaatgatgagaatgaactg |
103 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||| ||||||| ||| |||||||||||| |
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| T |
51496033 |
tggtagaaaaaagaaggtaagttatagttctgaagaaaatgacgaagatgaacaagatggggaaaatggtagaaatgttaagattgaggagaatgaactg |
51496132 |
T |
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| Q |
104 |
atcagtgaaaagaattcggaaagtgatgttttatctgatgatagtaaaggttattctttaag |
165 |
Q |
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| T |
51496133 |
atcagtgaaaagaattcagagagtggtgttttatctgatgataataaaggctattctttaag |
51496194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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