View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10135_low_4 (Length: 361)
Name: NF10135_low_4
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10135_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 5014424 - 5014771
Alignment:
| Q |
8 |
tctcacttatttttgaagattattggaccgaccatgtatattacgatc----tgtgaacacaacttgatcatattaggtaacactctcacttctctacac |
103 |
Q |
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| T |
5014424 |
tctcacttacttttaaagattattggaccgaccatgtatattacgatcctcatgtgaacacaacttgatcatattaggtaacactctcacttctctacac |
5014523 |
T |
|
| Q |
104 |
tatgccaactaatttttctacctccactttgagtcagagacatgagtttgaatcaagcaaacttcgtaaggacagttagtgagttcctttctgatcaaaa |
203 |
Q |
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| T |
5014524 |
tatgccaactaatttttctacctccactttgagccagagacatgagtttgaatcaagcaaacttcgtaaggacagttagtgagttcctttctgatcaaaa |
5014623 |
T |
|
| Q |
204 |
ggacactccaacaactacatga--------attacaatccctttgaacacgttaacaccatctaagaaacaacatacataatgcataccaagttttttac |
295 |
Q |
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| T |
5014624 |
ggacactccaacaactacatgaatatcactattacaatccctttgaatacg-taacaccatctaagaaacaacatacataatgcataccaagttttttac |
5014722 |
T |
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| Q |
296 |
attaacacatgatcatcaatcatgaaaccactagagagaaactcatgaa |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5014723 |
attaacacatgatcatcaatcatgaaaccactagagagaaactcatgaa |
5014771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 17828450 - 17828480
Alignment:
| Q |
9 |
ctcacttatttttgaagattattggaccgac |
39 |
Q |
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| T |
17828450 |
ctcacttatttttgaagattattggaccgac |
17828480 |
T |
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