View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10135_low_6 (Length: 321)
Name: NF10135_low_6
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10135_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 14731174 - 14731478
Alignment:
| Q |
1 |
ataagattaaataagtagcagaaagtcattgaagacaaaagattacactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14731174 |
ataagattaaataagtagcagaaagtcattgaagacaaaagattacactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacct |
14731273 |
T |
|
| Q |
101 |
gtcctccaaggagatcttcaatgcttcaagtttttcaaagtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14731274 |
gtcctccaaggagatcttcaatgcttcaagtttttcaaagtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgatt |
14731373 |
T |
|
| Q |
201 |
aagaaagagaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14731374 |
aagaaagagaaataacaataaggagaggatgaaatcattcagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccaga |
14731473 |
T |
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| Q |
301 |
atttg |
305 |
Q |
| |
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||||| |
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| T |
14731474 |
atttg |
14731478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 1096089 - 1095992
Alignment:
| Q |
208 |
agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttg |
305 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||| | || |||||||| ||||||||| |
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| T |
1096089 |
agaactaacaataaggagaggatgtaatcattgagaaaacaatttatcaagcagagcatgtccattcttacctgtaacagggagcacctcagaatttg |
1095992 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 46 - 268
Target Start/End: Original strand, 17592807 - 17593035
Alignment:
| Q |
46 |
cactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacctgtcctccaaggagatcttcaa------tgcttcaagtttttcaaa |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17592807 |
cactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacctgtcctccaaggagatcttcaaccttgatgcttcaagtttttcaaa |
17592906 |
T |
|
| Q |
140 |
gtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgattaagaaagagaaataacaataaggagaggatgaaatcatt |
239 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
17592907 |
gtgcctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcacttaagaaagagaaatagcaataaggagaggatgaaatcatt |
17593006 |
T |
|
| Q |
240 |
gagaaaacaataaatcagtcagagcatgt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
17593007 |
gagaaaacaataaatcagtcagagcatgt |
17593035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 9891194 - 9891281
Alignment:
| Q |
208 |
agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcacc |
295 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||||| | |||||| |
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| T |
9891194 |
agaactaacaataaggagaggatgtaatcattgagaaaacaatttatcaatcagagcatgtccattcttacctgcagcaggaagcacc |
9891281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 31236751 - 31236846
Alignment:
| Q |
208 |
agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatt |
303 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||| ||||||| |
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| T |
31236751 |
agaactaacaataaggagaggatgtaatcatcgagaaaacaatttatcactcagagcatgtccattcttacctgcagcagggagcacctcagaatt |
31236846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 31236536 - 31236712
Alignment:
| Q |
51 |
tacagtctacaccactgagacagatagcaaaaat--tgtcatttcacaacctgtcctccaaggagatcttca------atgcttcaagtttttcaaagtg |
142 |
Q |
| |
|
|||| |||||||||||||||||||||||| || | |||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
31236536 |
tacactctacaccactgagacagatagcacaacttctgtcctttcacaacttgtcctccaacgagatcttcatccttgatgcttcaagtttttcaaagtg |
31236635 |
T |
|
| Q |
143 |
tctctgagattaagaagttgtattttt--catgttttagaattcacaaaactc---atcgattaagaaagagaaata |
214 |
Q |
| |
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||||||||||| || ||| |||| | ||||||||||||| ||||| | || |||||||||||||| |||||| |
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| T |
31236636 |
actctgagattagaaaattgaatttatcacatgttttagaatccacaacattccatatcgattaagaaagggaaata |
31236712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 31253407 - 31253495
Alignment:
| Q |
216 |
caataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttg |
305 |
Q |
| |
|
||||||||| |||||||| || || ||||| ||||| ||||||| ||||||| |||| |||||||||||| |||||||| ||||||||| |
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| T |
31253407 |
caataaggaaaggatgaagacagtgtgaaaataataa-tcagtcaaagcatgttcattcttacctgcagcagggagcacctcagaatttg |
31253495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 16133645 - 16133556
Alignment:
| Q |
215 |
acaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaattt |
304 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||| |||||| ||||| | |||| |||||||||| |
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| T |
16133645 |
acaatatggagaggatgaagtcattgagaaaacaattgatcagtcagagcatgttcattcttacctacagcaggaagcagcccagaattt |
16133556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 16133875 - 16133841
Alignment:
| Q |
4 |
agattaaataagtagcagaaagtcattgaagacaa |
38 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |
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| T |
16133875 |
agattaaataagtagcagaaaatcattgaagacaa |
16133841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 442641 - 442571
Alignment:
| Q |
235 |
tcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttg |
305 |
Q |
| |
|
|||||||||||||||| |||| | |||||||||||||| |||||||||| | |||||||| ||||||||| |
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| T |
442641 |
tcattgagaaaacaatttatcaataagagcatgtccattcttacctgcagaagggagcacctcagaatttg |
442571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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