View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10136_high_1 (Length: 532)
Name: NF10136_high_1
Description: NF10136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10136_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 17109297 - 17109801
Alignment:
| Q |
18 |
acattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactacaatttccttgtaaaattggtcatcagtggtagctgtga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17109297 |
acattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactacaatttccttgtaaaattggtcatcagtggtggctgtga |
17109396 |
T |
|
| Q |
118 |
ctctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109397 |
ctctctaacgaccttccctctcaaactgttcccgaatcttgacactcttgatgtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacat |
17109496 |
T |
|
| Q |
218 |
cttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatctttcaa |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17109497 |
cttaaactcacatctctcttaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcacccaggcttcagcagttttatctttcaa |
17109596 |
T |
|
| Q |
318 |
aattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17109597 |
aattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctc |
17109696 |
T |
|
| Q |
418 |
cgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaaccttctcatcaactccctgaaatgggcgtttccagcaaatacatct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17109697 |
cgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaaccttctcatcaactccctgaaatgggcgtttccagcaaatacatct |
17109796 |
T |
|
| Q |
518 |
ctctg |
522 |
Q |
| |
|
||||| |
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|
| T |
17109797 |
ctctg |
17109801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 521
Target Start/End: Original strand, 16977965 - 16978468
Alignment:
| Q |
18 |
acattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactacaatttccttgtaaaattggtcatcagtggtagctgtga |
117 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||| |||| ||||| ||| || ||||| ||||||||||||||||| ||||| ||||||| || |
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|
| T |
16977965 |
acattaaatcgttgaaaattgaagattgcccaactatgcatattcccctatgcggatgctacagtttccttgtaaaattggacatcaccagtagctgcga |
16978064 |
T |
|
| Q |
118 |
ctctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacat |
217 |
Q |
| |
|
||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| ||||||||||||||||||||||| ||| |
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|
| T |
16978065 |
ctctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgagcat |
16978164 |
T |
|
| Q |
218 |
cttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatctttcaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || |||| | |
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|
| T |
16978165 |
cttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatatttcca |
16978264 |
T |
|
| Q |
318 |
aattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctc |
417 |
Q |
| |
|
|||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||| |||| ||| ||||| |
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|
| T |
16978265 |
aattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgattgtccacagttggagtcgttctc |
16978364 |
T |
|
| Q |
418 |
cgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaaccttctcatcaactccctgaaatgggcgtttccagcaaatacatct |
517 |
Q |
| |
|
|| | |||||||||| ||||| ||| || |||| |||| | ||||| || || ||||| |||||||| ||||||||||| || || | ||||||||| |
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|
| T |
16978365 |
cgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctcaaaacttcttatcaactcgctgaaatgggctttgccgaccaatacatct |
16978464 |
T |
|
| Q |
518 |
ctct |
521 |
Q |
| |
|
|||| |
|
|
| T |
16978465 |
ctct |
16978468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 17029837 - 17030314
Alignment:
| Q |
18 |
acattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactacaatttccttgtaaaattggtcatcagtggtagctgtga |
117 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||| |||| ||||| ||| || ||||||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
17029837 |
acattaaatcgttgaaaattgaagattgcgcaactatgcatattcccctatgcggatgctacaatttccttgtaaaattggacatcaccagtagctgcga |
17029936 |
T |
|
| Q |
118 |
ctctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacat |
217 |
Q |
| |
|
||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| ||||||||||||||||||||||| ||| |
|
|
| T |
17029937 |
ctctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgagcat |
17030036 |
T |
|
| Q |
218 |
cttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatctttcaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || |||| | |
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|
| T |
17030037 |
cttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatatttcca |
17030136 |
T |
|
| Q |
318 |
aattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctc |
417 |
Q |
| |
|
|||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| ||| ||||| |
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|
| T |
17030137 |
aattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgttctc |
17030236 |
T |
|
| Q |
418 |
cgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaaccttctcatcaactccctgaaatg |
495 |
Q |
| |
|
|| | |||||||||| ||||| ||| || |||| |||| | ||||| || || ||||| |||||||| ||||||| |
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|
| T |
17030237 |
cgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctcaaaacttcttatcaactcattgaaatg |
17030314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 17048175 - 17048652
Alignment:
| Q |
18 |
acattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactacaatttccttgtaaaattggtcatcagtggtagctgtga |
117 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||| |||| ||||| ||| || ||||||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
17048175 |
acattaaatcgttgaaaattgaagattgcgcaactatgcatattcccctatgcggatgctacaatttccttgtaaaattggacatcaccagtagctgcga |
17048274 |
T |
|
| Q |
118 |
ctctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacat |
217 |
Q |
| |
|
||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| ||||||||||||||||||||||| ||| |
|
|
| T |
17048275 |
ctctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaatgagcat |
17048374 |
T |
|
| Q |
218 |
cttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatctttcaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || |||| | |
|
|
| T |
17048375 |
cttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatatttcca |
17048474 |
T |
|
| Q |
318 |
aattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctc |
417 |
Q |
| |
|
|||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| ||| ||||| |
|
|
| T |
17048475 |
aattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgttctc |
17048574 |
T |
|
| Q |
418 |
cgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaaccttctcatcaactccctgaaatg |
495 |
Q |
| |
|
|| | |||||||||| ||||| ||| || |||| |||| | ||||| || || ||||| |||||||| ||||||| |
|
|
| T |
17048575 |
cgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctcaaaacttcttatcaactcattgaaatg |
17048652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 17024324 - 17024395
Alignment:
| Q |
170 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
241 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
|
|
| T |
17024324 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17024395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 17024488 - 17024531
Alignment:
| Q |
329 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
372 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17024488 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17024531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 17035086 - 17035157
Alignment:
| Q |
170 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
241 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
|
|
| T |
17035086 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17035157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 17035250 - 17035293
Alignment:
| Q |
329 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
372 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17035250 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17035293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 17089596 - 17089667
Alignment:
| Q |
170 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
241 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
|
|
| T |
17089596 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17089667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 17089760 - 17089803
Alignment:
| Q |
329 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
372 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17089760 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17089803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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