View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10136_high_2 (Length: 431)

Name: NF10136_high_2
Description: NF10136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10136_high_2
NF10136_high_2
[»] chr6 (14 HSPs)
chr6 (18-431)||(6394355-6394767)
chr6 (54-225)||(14820140-14820311)
chr6 (278-391)||(14820443-14820556)
chr6 (321-422)||(6423010-6423111)
chr6 (292-431)||(6589519-6589658)
chr6 (264-361)||(14818152-14818248)
chr6 (53-127)||(6426035-6426109)
chr6 (317-395)||(10579969-10580047)
chr6 (316-431)||(19632227-19632342)
chr6 (275-346)||(6426279-6426350)
chr6 (349-419)||(7994390-7994460)
chr6 (328-388)||(7119002-7119062)
chr6 (328-388)||(7131480-7131540)
chr6 (21-65)||(14820083-14820127)
[»] chr7 (2 HSPs)
chr7 (262-422)||(15092356-15092515)
chr7 (94-139)||(15092659-15092704)
[»] chr1 (3 HSPs)
chr1 (18-260)||(49218728-49218976)
chr1 (278-327)||(49219072-49219121)
chr1 (274-374)||(33160474-33160578)


Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 6394355 - 6394767
Alignment:
Q  18 aggtacacatattatcaagttaaacatacttgagttatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatatta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394355 aggtacacatattatcaagttaaacatacttgagttatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatatta 6394454  T
Q  118 actttcaagttggattaaaatacaaagtaagtttgactgcagagttgcgacttatgacgctgccatgttgggcatcggcattatttcacaaattgactga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6394455 actttcaagttggattaaaatacaaagtaagtttgactgcagagttgcgacttatgacgctgccatgttgggcatcggcattatttcacaaattgactaa 6394554  T
Q  218 aatggttgtcaaaaatccatcatccggccatggcctagccttttaaatttgtaagattgacattttaaaaaggaaatttcttagagaagtaaatgttgaa 317  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6394555 aatggttgtcaaaaatccaccatccggccatggcctagccttttaaatttgtaaga-tgacattttaaaaaggaaatttctcagagaagtaaatgttgaa 6394653  T
Q  318 acaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcact 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6394654 acaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaatagaagttccctattttcgtcact 6394753  T
Q  418 tacatcaatatccc 431  Q
    ||||||||||||||    
T  6394754 tacatcaatatccc 6394767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 54 - 225
Target Start/End: Original strand, 14820140 - 14820311
Alignment:
Q  54 atcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatattaactttcaagttggattaaaatacaaagtaagtttga 153  Q
    |||||||||||||||||||||||||||||||||||| || |||  | |||||||||  |||||| ||||||||||| || |||||| ||| |||||||||    
T  14820140 atcatacttcaaacacatatcattaatcaattcataagctatacacattatttactatatattagctttcaagttgaatcaaaatataaattaagtttga 14820239  T
Q  154 ctgcagagttgcgacttatgacgctgccatgttgggcatcggcattatttcacaaattgactgaaatggttg 225  Q
    |  | |||||||||||| || ||| ||||| || |||||| |||||  || |||||||||||  ||||||||    
T  14820240 ccactgagttgcgacttttggcgccgccatattaggcatcagcattcctttacaaattgactacaatggttg 14820311  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 391
Target Start/End: Original strand, 14820443 - 14820556
Alignment:
Q  278 cattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatac 377  Q
    ||||||||||||| || |||| ||||| |||||| || ||||||||| |||||||||||||||||||||||||  ||||||||| |||||||||||| |     
T  14820443 cattttaaaaaggcaaattctcagagatgtaaatcttaaaacaaaaacaacttacagtgttcaaacttcagcaacgcaatttcataatactagcaaagat 14820542  T
Q  378 ggcatccacgacgc 391  Q
    | ||||||||||||    
T  14820543 gacatccacgacgc 14820556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 321 - 422
Target Start/End: Original strand, 6423010 - 6423111
Alignment:
Q  321 aaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcacttac 420  Q
    |||| |||||||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||  |||||  |||| | |||||| |||||||||    
T  6423010 aaaacaacttacagtgttcaaactttagcatagaaatttcagaatactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttac 6423109  T
Q  421 at 422  Q
    ||    
T  6423110 at 6423111  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 431
Target Start/End: Complemental strand, 6589658 - 6589519
Alignment:
Q  292 aatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgc 391  Q
    ||||||| |||||||| ||| || ||||||||| ||||||||||||||| |||| |||| ||||||||||||||||||| ||| | |||||||| || |     
T  6589658 aatttctcagagaagtgaatattaaaacaaaaacaacttacagtgttcatactttagcacagcaatttcagaatactagtaaagatggcatccatgatgg 6589559  T
Q  392 aagagaagttccctattttcgtcacttacatcaatatccc 431  Q
     |||  | ||||||| ||| |||||||| || ||||||||    
T  6589558 gagaagatttccctagttttgtcacttaaatgaatatccc 6589519  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 14818152 - 14818248
Alignment:
Q  264 atttgtaagattgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttca 361  Q
    ||||||||||| | ||||||||||||| || |||| | ||| |||||| || ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  14818152 atttgtaagat-gtcattttaaaaaggcaaattctcaaagatgtaaatcttaaaacaaaaacaacttacagtgttcaaacttcagcaaagcaatttca 14818248  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 6426035 - 6426109
Alignment:
Q  53 tatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatattaactttcaagt 127  Q
    ||||| |||||||||||||||||||| |||||||||| || |||||||||||||  ||||||||| |||||||||    
T  6426035 tatcacacttcaaacacatatcattagtcaattcataagctatatgccttattttgttcatattagctttcaagt 6426109  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 10580047 - 10579969
Alignment:
Q  317 aacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaaga 395  Q
    |||||||| ||||||||| |||||||||||||| ||||| ||| |||||||||||||| | |||||||| |||||||||    
T  10580047 aacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaaggcatccatgacgcaaga 10579969  T

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Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 316 - 431
Target Start/End: Original strand, 19632227 - 19632342
Alignment:
Q  316 aaacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtca 415  Q
    ||||||||| ||||||||| ||||||||||||  |||||| |||| ||||||||||||| | |||||||| ||||||||   |||| |||| ||| ||||    
T  19632227 aaacaaaaacaacttacagggttcaaacttcataatagcattttcggaatactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtca 19632326  T
Q  416 cttacatcaatatccc 431  Q
    |||  || ||||||||    
T  19632327 cttgaatgaatatccc 19632342  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 6426279 - 6426350
Alignment:
Q  275 tgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttc 346  Q
    ||||||||||||||||  |||||| ||||||||||||  | ||||||||| |||||||| ||||||||||||    
T  6426279 tgacattttaaaaaggctatttctcagagaagtaaatcataaaacaaaaacaacttacaatgttcaaacttc 6426350  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 419
Target Start/End: Complemental strand, 7994460 - 7994390
Alignment:
Q  349 catagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcactta 419  Q
    ||||| ||||||||||||||| || ||| |||||||  ||||| |||  ||||||||||||| ||||||||    
T  7994460 catagaaatttcagaatactaacagataaggcatccgtgacgcgagaagagttccctatttttgtcactta 7994390  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 7119002 - 7119062
Alignment:
Q  328 cttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacga 388  Q
    ||||||||||| |||||||| ||||||||||  | |||||||||||| | | |||||||||    
T  7119002 cttacagtgtttaaacttcaacatagcaattaaataatactagcaaagaagacatccacga 7119062  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 7131480 - 7131540
Alignment:
Q  328 cttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacga 388  Q
    ||||||||||| |||||||| ||||||||||  | |||||||||||| | | |||||||||    
T  7131480 cttacagtgtttaaacttcaacatagcaattaaataatactagcaaagaagacatccacga 7131540  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 14820083 - 14820127
Alignment:
Q  21 tacacatattatcaagttaaacatacttgagttatcatacttcaa 65  Q
    |||||||| ||||||||||||||| || ||||| |||||||||||    
T  14820083 tacacataatatcaagttaaacattctagagttttcatacttcaa 14820127  T

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Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 262 - 422
Target Start/End: Complemental strand, 15092515 - 15092356
Alignment:
Q  262 aaatttgtaagattgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttca 361  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15092515 aaatttgaaagat-gacattttaaaaaggaaatttctcagagaagtaaatcttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttca 15092417  T
Q  362 gaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcacttacat 422  Q
    ||||||||||||||| |||||||||||||| |||  |||| |||| ||| |||||||||||    
T  15092416 gaatactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcacttacat 15092356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 15092704 - 15092659
Alignment:
Q  94 atatgccttatttacttcatattaactttcaagttggattaaaata 139  Q
    ||||||||||||||||| |||||| ||||||||||| || ||||||    
T  15092704 atatgccttatttactttatattagctttcaagttgaatcaaaata 15092659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 49218728 - 49218976
Alignment:
Q  18 aggtacacatattatcaagttaaacatacttgagttatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttca----- 112  Q
    |||| |||||||||||||||||||| ||  |||||||||||||  |||| |||||||||||||||||||||| || |||||||||||||||||||         
T  49218728 aggtgcacatattatcaagttaaacttatatgagttatcataccccaaatacatatcattaatcaattcataagctatatgccttatttacttcacttca 49218827  T
Q  113 tattaactttcaagttggattaaaatacaaagtaagtttgactgcagagttgcgacttatgacgctgccatgttgggcatcggcatt-atttcacaaatt 211  Q
    ||| | ||||||||||| || ||||| |||| || | ||||| || || ||||||| |||  |||||||||| ||||||||||||||    ||| |||||    
T  49218828 tatcagctttcaagttgaataaaaattcaaattatgcttgacagctgaattgcgacatatagcgctgccatggtgggcatcggcattccaatcataaatt 49218927  T
Q  212 gactgaaatggttgtcaaaaatccatcatccggccatggcctagccttt 260  Q
    ||||| ||||||||| ||| |||| ||||||  ||||||| ||||||||    
T  49218928 gactgcaatggttgttaaacatccgtcatcctaccatggcgtagccttt 49218976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 49219072 - 49219121
Alignment:
Q  278 cattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaa 327  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49219072 cattttaaaaaggaaatttcttagagaagtaaatcttgaaacaaaaagaa 49219121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 374
Target Start/End: Original strand, 33160474 - 33160578
Alignment:
Q  274 ttgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttc----aaacttcagcatagcaatttcagaatacta 369  Q
    ||||||||||||||| | ||||||| |||||||||||| || || |||||| ||||||||  ||||    |||||| ||||||||| ||||| |||||||    
T  33160474 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagcactttcataatacta 33160573  T
Q  370 gcaaa 374  Q
    |||||    
T  33160574 gcaaa 33160578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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