View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10136_high_3 (Length: 427)
Name: NF10136_high_3
Description: NF10136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10136_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 2 - 411
Target Start/End: Original strand, 20217400 - 20217804
Alignment:
| Q |
2 |
gagagaagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattgacttgatcttcttgcaaattgcatccaagtcaaatgaca |
101 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
20217400 |
gagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattgactcgatcttcttgcaagttgcatccaagtcaaatgaca |
20217499 |
T |
|
| Q |
102 |
aattagaatgcgcataatgcatataaattgaggagtaatgcatacacaattaacttaccaagcatatagaacaagtcaagtcaatgtcaattttgataga |
201 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20217500 |
aattagaatgcgcataatgcatataaa-----gagtaatgcatacacaattaacttaccaagcatatagaacaagtcaagtcaatgtcaattttgataga |
20217594 |
T |
|
| Q |
202 |
atcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaacattcatcaaacaaagcagtttccttccttgaattgaccttggtttct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20217595 |
atcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaacattcatcaaacaaagcagtttccttccttgaattgaccttggtttct |
20217694 |
T |
|
| Q |
302 |
cttaaattgatgtggaatgccataagttcacagagccacggactttgaagaatttccttgtgcatactctgaacttgtgacttaaacaattgcccttgct |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20217695 |
cttaaattgatgtggaatgccataagttcacagagccacggactttgaagaatttccttgtgcatactctgaacttgtgacttaaacaattgcccttgct |
20217794 |
T |
|
| Q |
402 |
tggaataatg |
411 |
Q |
| |
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|||||||||| |
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| T |
20217795 |
tggaataatg |
20217804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 2 - 335
Target Start/End: Original strand, 20236998 - 20237326
Alignment:
| Q |
2 |
gagagaagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattgacttgatcttcttgcaaattgcatccaagtcaaatgaca |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
20236998 |
gagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattgactcgatcttcttgcaagttgcatccaagtcaaatgaca |
20237097 |
T |
|
| Q |
102 |
aattagaatgcgcataatgcatataaattgaggagtaatgcatacacaattaacttaccaagcatatagaacaagtcaagtcaatgtcaattttgataga |
201 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20237098 |
aattagaatgcgcataatgcatataaa-----gagtaatgcatacacaattaacttaccaagcatatagaacaagtcaagtcaatgtcaattttgataga |
20237192 |
T |
|
| Q |
202 |
atcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaacattcatcaaacaaagcagtttccttccttgaattgaccttggtttct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20237193 |
atcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaacattcatcaaacaaagcagtttccttccttgaattgaccttggtttct |
20237292 |
T |
|
| Q |
302 |
cttaaattgatgtggaatgccataagttcacaga |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
20237293 |
cttaaattgatgtggaatgccataagttcacaga |
20237326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 2 - 411
Target Start/End: Original strand, 44301912 - 44302316
Alignment:
| Q |
2 |
gagagaagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattgacttgatcttcttgcaaattgcatccaagtcaaatgaca |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
44301912 |
gagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattgactcgatcttcttgcaagttgcatccaagtcaaatgaca |
44302011 |
T |
|
| Q |
102 |
aattagaatgcgcataatgcatataaattgaggagtaatgcatacacaattaacttaccaagcatatagaacaagtcaagtcaatgtcaattttgataga |
201 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44302012 |
aattagaatgcgcataatgcatataaa-----gagtaatgcatacacaattaacttaccaagcatatagaacaagtcaagtcaatgtcaattttgataga |
44302106 |
T |
|
| Q |
202 |
atcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaacattcatcaaacaaagcagtttccttccttgaattgaccttggtttct |
301 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44302107 |
atcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaacattcatcaaacaaagcagtttccttccttgaattgaccttggtttct |
44302206 |
T |
|
| Q |
302 |
cttaaattgatgtggaatgccataagttcacagagccacggactttgaagaatttccttgtgcatactctgaacttgtgacttaaacaattgcccttgct |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44302207 |
cttaaattgatgtggaatgccataagttcacagagccacggactttgaagaatttccttgtgcatactctgaacttgtgacttaaacaattgcccttgct |
44302306 |
T |
|
| Q |
402 |
tggaataatg |
411 |
Q |
| |
|
|||||||||| |
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|
| T |
44302307 |
tggaataatg |
44302316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 152 - 411
Target Start/End: Complemental strand, 39654125 - 39653866
Alignment:
| Q |
152 |
taacttaccaagcatatagaacaagtcaagtcaatgtcaattttgatagaatcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagag |
251 |
Q |
| |
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||||||||||| |||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
39654125 |
taacttaccaaacatatagagcaagtcagatcaatatcaattttgatggaatcaaagagctcacaagcaagtgatggttttccatccttaaatgtgagac |
39654026 |
T |
|
| Q |
252 |
aacattcatcaaacaaagcagtttccttccttgaattgaccttggtttctcttaaattgatgtggaatgccataagttcacagagccacggactttgaag |
351 |
Q |
| |
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| ||| ||| || || || ||| ||||||||| ||| | || ||||| | || |||||| || |||||||| || ||| ||||| ||||| ||||| |
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| T |
39654025 |
agcatccattgaataatgcggttgccttccttggcttgtctttagtttcccgtagattgatatgtaatgccatcagctcaataagccagggactctgaag |
39653926 |
T |
|
| Q |
352 |
aatttccttgtgcatactctgaacttgtgacttaaacaattgcccttgcttggaataatg |
411 |
Q |
| |
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|||||||||||||||| |||| |||||||||| || |||||||||||||| |||||||| |
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|
| T |
39653925 |
aatttccttgtgcatagtctgggcttgtgacttgaataattgcccttgcttagaataatg |
39653866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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