View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10136_high_9 (Length: 220)
Name: NF10136_high_9
Description: NF10136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10136_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 9283827 - 9283646
Alignment:
| Q |
18 |
atgaataaactactttggaagataagagttgaaagggctatctaatgagagacatgaattgaatgaaccactcannnnnnnaggcacaacatcatatgaa |
117 |
Q |
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| T |
9283827 |
atgaataaactactttggaagataagagttgaaagggctatttaatgagagacatgaattgaatgaaccactcatttttttaggcacaacatcatatgaa |
9283728 |
T |
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| Q |
118 |
tgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttgc |
199 |
Q |
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| T |
9283727 |
tgataaaccatcatcatatgagagacatgaatgaaccactgctttgggatatgagagttgaaaatgatagttgcagacttgc |
9283646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 35051298 - 35051395
Alignment:
| Q |
99 |
aggcacaacatcatatgaatgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttg |
198 |
Q |
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| T |
35051298 |
aggcacaacaccatatgattgataaaccatcagaat--gag-gacatgaatgaaccacttctttgggagatgagagttgaagatgattgttgcagacttg |
35051394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 53324324 - 53324229
Alignment:
| Q |
99 |
aggcacaacatcatatgaatgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagactt |
197 |
Q |
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| T |
53324324 |
aggcacaacaccatatgattgataaaccatcataat--gag-gacatgaatgaaccacttctttggaagacgagagttgaagatgattgttgcagactt |
53324229 |
T |
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