View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10136_low_12 (Length: 240)
Name: NF10136_low_12
Description: NF10136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10136_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 26311176 - 26310954
Alignment:
| Q |
18 |
agtcatctattctagggatccatacctcaataggagtaccaagaggggatataagaacctctatcttaaaggatgatctgtccaccaccgggaacctcat |
117 |
Q |
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| T |
26311176 |
agtcatccattctagggacccatacctcaataggagtaccaagagggaatataagaacctctatcttaaaagatgatctgtccaccatcgggaacctcat |
26311077 |
T |
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| Q |
118 |
gagattcatgttaacacaatgccatggaatgaagatcgactagaccgaccccaaagtcctagtttggacaaggaggatagtcttgactcgccttaccttc |
217 |
Q |
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| T |
26311076 |
gagattcatgttaacacaatgccatggaatgaagatcgactagaccgaccccaaagtcctagtttggacaaggaggatagtcttgactcgccttaccttc |
26310977 |
T |
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| Q |
218 |
ttcatgccacaaagctacttccg |
240 |
Q |
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| T |
26310976 |
ttcatgccacaaaactacttccg |
26310954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 26316380 - 26316336
Alignment:
| Q |
119 |
agattcatgttaacacaatgccatggaatgaagatcgactagacc |
163 |
Q |
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| T |
26316380 |
agattcatgttaacgcaatgtcatggaatgaagatcgactagacc |
26316336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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