View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10136_low_13 (Length: 239)

Name: NF10136_low_13
Description: NF10136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10136_low_13
NF10136_low_13
[»] chr6 (25 HSPs)
chr6 (1-225)||(6394749-6394973)
chr6 (39-225)||(6426434-6426620)
chr6 (20-225)||(14820597-14820802)
chr6 (27-221)||(6432072-6432266)
chr6 (20-223)||(14818287-14818489)
chr6 (108-221)||(6409998-6410111)
chr6 (30-221)||(6415880-6416071)
chr6 (31-221)||(6594600-6594790)
chr6 (1-215)||(7994182-7994396)
chr6 (21-221)||(6402765-6402965)
chr6 (1-213)||(6423102-6423314)
chr6 (12-221)||(19632335-19632544)
chr6 (1-221)||(6589317-6589537)
chr6 (33-221)||(7119074-7119262)
chr6 (33-221)||(7131552-7131740)
chr6 (111-209)||(14802331-14802429)
chr6 (27-199)||(10579752-10579925)
chr6 (33-221)||(6585231-6585419)
chr6 (115-209)||(6596934-6597028)
chr6 (108-217)||(9411347-9411456)
chr6 (156-225)||(12102306-12102375)
chr6 (27-213)||(6603204-6603390)
chr6 (108-211)||(11936279-11936382)
chr6 (108-211)||(11948259-11948362)
chr6 (29-67)||(12102219-12102257)
[»] chr7 (2 HSPs)
chr7 (1-225)||(15092141-15092365)
chr7 (30-221)||(10614507-10614698)
[»] chr3 (4 HSPs)
chr3 (40-221)||(13470726-13470907)
chr3 (31-221)||(51764434-51764624)
chr3 (22-221)||(51113775-51113974)
chr3 (32-225)||(51120883-51121076)
[»] chr8 (8 HSPs)
chr8 (20-213)||(27922412-27922605)
chr8 (108-221)||(18315267-18315380)
chr8 (108-216)||(32151293-32151401)
chr8 (21-188)||(34936190-34936357)
chr8 (115-190)||(17628039-17628114)
chr8 (34-214)||(17636402-17636581)
chr8 (156-216)||(21235598-21235658)
chr8 (21-62)||(21235463-21235504)
[»] chr5 (6 HSPs)
chr5 (30-221)||(20478076-20478267)
chr5 (21-208)||(41901542-41901729)
chr5 (22-213)||(32267381-32267572)
chr5 (113-213)||(41889556-41889656)
chr5 (108-208)||(37937879-37937979)
chr5 (111-209)||(38267562-38267660)
[»] chr1 (6 HSPs)
chr1 (105-221)||(19468493-19468609)
chr1 (109-206)||(9586632-9586729)
chr1 (111-216)||(43634902-43635007)
chr1 (117-190)||(52082582-52082655)
chr1 (111-193)||(9581064-9581148)
chr1 (21-86)||(7554393-7554458)
[»] chr4 (26 HSPs)
chr4 (20-216)||(1548423-1548619)
chr4 (113-221)||(532186-532294)
chr4 (108-223)||(1524478-1524593)
chr4 (109-215)||(8187091-8187197)
chr4 (22-216)||(546819-547013)
chr4 (39-225)||(55908718-55908904)
chr4 (108-191)||(553471-553554)
chr4 (109-216)||(55505107-55505214)
chr4 (108-214)||(12121458-12121564)
chr4 (39-216)||(53761771-53761945)
chr4 (109-190)||(640908-640989)
chr4 (108-215)||(1513407-1513514)
chr4 (111-214)||(8184031-8184134)
chr4 (108-218)||(1537764-1537874)
chr4 (154-214)||(1519143-1519203)
chr4 (109-221)||(1552761-1552873)
chr4 (108-212)||(7225886-7225990)
chr4 (109-166)||(566182-566239)
chr4 (108-185)||(1508033-1508110)
chr4 (150-215)||(1600453-1600518)
chr4 (21-61)||(1524637-1524677)
chr4 (109-213)||(7307853-7307957)
chr4 (112-206)||(659707-659799)
chr4 (150-188)||(12116602-12116640)
chr4 (17-62)||(553380-553425)
chr4 (21-62)||(570256-570297)
[»] chr2 (3 HSPs)
chr2 (21-216)||(45245084-45245279)
chr2 (39-225)||(1037654-1037840)
chr2 (131-214)||(32785773-32785856)
[»] scaffold0295 (1 HSPs)
scaffold0295 (39-225)||(614-800)
[»] scaffold0807 (1 HSPs)
scaffold0807 (122-213)||(1466-1560)
[»] scaffold0041 (1 HSPs)
scaffold0041 (109-188)||(39177-39256)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6394749 - 6394973
Alignment:
Q  1 tcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6394749 tcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaa 6394848  T
Q  101 gttgtaattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394849 gttgtaattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaac 6394948  T
Q  201 tgcaaagttcattccatgtagtttc 225  Q
    |||||||||||||||||||||||||    
T  6394949 tgcaaagttcattccatgtagtttc 6394973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 6426434 - 6426620
Alignment:
Q  39 ttgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattctttgagatc 138  Q
    ||||||||||||||||||||| |||| |||||||||   |||||||  ||||||||| ||||||  ||||||||||| || |||||||||||||||||||    
T  6426434 ttgtgtgcagttttctaccacttgtttcacacccttcattgtgacacctttacaattttcaagtaataattgcaaaatccgacaacaattctttgagatc 6426533  T
Q  139 acagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttc 225  Q
     || ||| |||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6426534 gcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttc 6426620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 14820597 - 14820802
Alignment:
Q  20 ccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagccc 119  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||| |||||||||  |||||||||  ||||| || ||||||  |||| ||||||||||    
T  14820597 ccaaattaatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagccc 14820696  T
Q  120 acaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgt 219  Q
    |||||||||||| ||||||| | |||| ||||||| ||||||  |||||||||| |||||||||||||| | || ||||||||||||||| |||||||||    
T  14820697 acaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgt 14820796  T
Q  220 agtttc 225  Q
    ||||||    
T  14820797 agtttc 14820802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 6432072 - 6432266
Alignment:
Q  27 aatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaa 126  Q
    ||||| ||||||||||||||| |||||||||||| ||| ||| |||||   ||||||||| | |||||| |  ||   || ||||| |||||||||||||    
T  6432072 aatctttctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaa 6432171  T
Q  127 ttctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  6432172 ttctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtag 6432266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 14818287 - 14818489
Alignment:
Q  20 ccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagccc 119  Q
    |||||||||| |||||||  ||||||||||||||||| ||||||| |||||||||  |||||||||| |||||||| ||||||  |||| ||||||||||    
T  14818287 ccaaattaat-tctctcagctgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagccc 14818385  T
Q  120 acaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgt 219  Q
    | |||||||||| ||||||| | |||| ||||||| ||||||  |||||||||| |||||||||||||| | || | ||||||||||||| |||||||||    
T  14818386 agaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgagaactgcaaagttaattccatgt 14818485  T
Q  220 agtt 223  Q
    ||||    
T  14818486 agtt 14818489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 6409998 - 6410111
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||    
T  6409998 ttgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaag 6410097  T
Q  208 ttcattccatgtag 221  Q
    ||||||||||||||    
T  6410098 ttcattccatgtag 6410111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 6415880 - 6416071
Alignment:
Q  30 ctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattc 129  Q
    |||||| | |||||||||||| ||||||||||||| ||| |||  | |||||||||| | ||||   ||||||  || |||||||||||| | |||||||    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 6415979  T
Q  130 tttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
    |||||||||||| | ||||||| ||||| |||  |||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||    
T  6415980 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtag 6416071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 6594790 - 6594600
Alignment:
Q  31 tctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattct 130  Q
    ||||||||||||||||||||||||||||||||||   | ||||   |||||| ||  | |||||| || |||| || ||| |||||||||||||||||||    
T  6594790 tctctcaattgtgtgcagttttctaccacatgtttggctccctcctctgtgagatgatcacaattttctagttttagttgtaaaagcccacaacaattct 6594691  T
Q  131 ttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
    |||||||||||   || || |||||||||||   |||||||||||||| |||||||||||| | |||||||  |||||| |||||||||||    
T  6594690 ttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtag 6594600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7994396 - 7994182
Alignment:
Q  1 tcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaa 100  Q
    ||||||| || || |||||| |||| ||||||| ||| ||| |||||||||||||||||||||| ||| ||||   | || ||||  ||||||   ||||    
T  7994396 tcacttatatgaaaatcccctaaataaatctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaa 7994297  T
Q  101 gttgtaattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaac 200  Q
    ||  || ||||||||| ||| |||||||||||||||||||| | || ||||| |||| ||| ||||||||||||| |||||||||||| ||||  |||||    
T  7994296 gtaatagttgcaaaagtccagaacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaac 7994197  T
Q  201 tgcaaagttcattcc 215  Q
    | |||||||||||||    
T  7994196 tacaaagttcattcc 7994182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 6402765 - 6402965
Alignment:
Q  21 caaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaat-tatcaagttgtaattgcaaaagccc 119  Q
    ||||| ||||||||||| |||||| |||||||||| |||||||| | | |||||| |||||||||| | ||||| | |||| |  || || |||||||||    
T  6402765 caaataaatctctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaa-taatagtttcaaaagccc 6402863  T
Q  120 acaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgt 219  Q
    || ||||||||||||||||||| | || ||||||||||||||  | |||| ||||||||||||||| || || | ||||||||||||||| |||||| ||    
T  6402864 actacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagt 6402963  T
Q  220 ag 221  Q
    ||    
T  6402964 ag 6402965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6423102 - 6423314
Alignment:
Q  1 tcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaa 100  Q
    |||||||||| || ||| ||||||| |||||||||||||||||||||||||  ||||||| ||| ||  || ||   ||| ||||  | |||||  ||||    
T  6423102 tcacttacatgaaaatctcccaaataaatctctctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaa 6423201  T
Q  101 gttgtaattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaac 200  Q
    ||  || |||||||| |||||||||| ||||||||||| || | || |||| |||   ||| ||||||||||||||||||||||||||||||| ||||||    
T  6423202 gtaatagttgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaac 6423301  T
Q  201 tgcaaagttcatt 213  Q
    |  ||||||||||    
T  6423302 ttaaaagttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 19632335 - 19632544
Alignment:
Q  12 aatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgc 111  Q
    |||||||||||||| ||||||  ||| |||| |||||||||||||||| |||| ||| |||||  |||||| |||   |||||| |  |||   | ||||    
T  19632335 aatatcccccaaataaatctccttcagttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgc 19632434  T
Q  112 aaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttca 211  Q
    |||||||||||||||||||||||||||||| ||||    |||||||||||  ||||||  ||||||| ||||||||| |||| |||||||  |||||| |    
T  19632435 aaaagcccacaacaattctttgagatcacaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagttta 19632534  T
Q  212 ttccatgtag 221  Q
    ||||| ||||    
T  19632535 ttccaagtag 19632544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6589537 - 6589317
Alignment:
Q  1 tcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaa 100  Q
    ||||||| || ||||||||||| || |||||||   | | |||||||||||||||||||||||| ||| ||||   | |||||||  ||||||   | ||    
T  6589537 tcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaa 6589438  T
Q  101 gttgtaattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaac 200  Q
    ||  |||||||| ||||||   |||||| |||||||||| | | || |||| ||||| |||  |||||||||||||||||||||||||||||  ||||||    
T  6589437 gtgataattgcataagccctatacaattttttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaac 6589338  T
Q  201 tgcaaagttcattccatgtag 221  Q
    | |||||||||||||| ||||    
T  6589337 tacaaagttcattccaagtag 6589317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 7119074 - 7119262
Alignment:
Q  33 tctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattcttt 132  Q
    |||||||||||||||||||||| ||||||||| |||  | |||  ||||||||  | |||||  |  |||  || || ||||||||| |||||||||||     
T  7119074 tctcaattgtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7119173  T
Q  133 gagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
    |||||||||   || ||||||||||||||  | |||| ||||||||||||||||||||||| | ||||  |||||||||||||| ||||    
T  7119174 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtag 7119262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 7131552 - 7131740
Alignment:
Q  33 tctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattcttt 132  Q
    |||||||||||||||||||||| ||||||||| |||  | ||   ||||||||  | |||||  |  |||  || || ||||||||| |||||||||||     
T  7131552 tctcaattgtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttc 7131651  T
Q  133 gagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
    |||||||||   || ||||||||||||||  | |||| ||||||||||||||||||||||| | ||||  |||||||||||||| ||||    
T  7131652 gagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtag 7131740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 14802331 - 14802429
Alignment:
Q  111 caaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagtt 209  Q
    |||||| ||||||||||||||||| |||||| | || ||||||||||||||  ||||||||||||| |||||||| |||| || ||||||| |||||||    
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 10579925 - 10579752
Alignment:
Q  27 aatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttg-taattgcaaaagcccacaaca 125  Q
    ||||||||| | ||||||||||||||||||||||||||  || |||||   ||||||  ||||||| || |  |||   || || |||||||| ||||||    
T  10579925 aatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaaca 10579826  T
Q  126 attctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaa 199  Q
    |||||||||||||  | | || |||| |||||||||  |||||| ||||||||||||||||||||||| |||||    
T  10579825 attctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaa 10579752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 6585419 - 6585231
Alignment:
Q  33 tctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattcttt 132  Q
    ||||| |||||||||  ||||||||||||||| ||  |||||  |||||||||||| ||||   |  |||  || || ||||||| || ||||| |||||    
T  6585419 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 6585320  T
Q  133 gagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
    ||||||||| | || ||||||||||||||  |||||| |||||||||||| ||||||| || || ||||  |||||| |||||| ||||    
T  6585319 gagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtag 6585231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 6597028 - 6596934
Alignment:
Q  115 agcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagtt 209  Q
    |||||| ||||||||||||||||  |  | || ||||||||||||||  ||||| |||||||||||||||||||||||| ||||| | |||||||    
T  6597028 agcccagaacaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtt 6596934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 217
Target Start/End: Original strand, 9411347 - 9411456
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    ||||||||| |||| |||||||||||||||| || | ||  |||||||   ||| | ||||| ||||||||||||||||||||||| ||||||  |||||    
T  9411347 ttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaag 9411446  T
Q  208 ttcattccat 217  Q
    |||| |||||    
T  9411447 ttcaatccat 9411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 12102306 - 12102375
Alignment:
Q  156 atcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttc 225  Q
    |||||| | ||||| ||||||||||||||||||||| | ||||||| ||||||||| |||||| ||||||    
T  12102306 atcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtttc 12102375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 6603390 - 6603204
Alignment:
Q  27 aatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaat-tatcaagttgtaattgcaaaagcccacaaca 125  Q
    ||||| ||||| |||| ||||||||||||||||||||| ||| || ||  |||||||||  | ||||| | |||| |  || || ||||||||||  |||    
T  6603390 aatctttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaa-taatagttccaaaagcccaggaca 6603292  T
Q  126 attctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcatt 213  Q
    | ||||||||||| || | |  |||||||||||||| | ||||| || ||||| ||||||||  |||| ||||| | |||||||||||    
T  6603291 actctttgagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacctgtagcttgggaagtacaaagttcatt 6603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 11936382 - 11936279
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    |||||||||||||| |||| |||||||||||  | | || | || ||| ||||| ||||||  |||||||| |||||||||||| | ||||||| |||||    
T  11936382 ttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaag 11936283  T
Q  208 ttca 211  Q
    ||||    
T  11936282 ttca 11936279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 11948362 - 11948259
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    |||||||||||||| |||| |||||||||||  | | || | || ||| ||||| ||||||  |||||||| |||||||||||| | ||||||| |||||    
T  11948362 ttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaag 11948263  T
Q  208 ttca 211  Q
    ||||    
T  11948262 ttca 11948259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 12102219 - 12102257
Alignment:
Q  29 tctctctcaattgtgtgcagttttctaccacatgttcca 67  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  12102219 tctctctcagttgtgtgcagttttctaccacatgatcca 12102257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 15092365 - 15092141
Alignment:
Q  1 tcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaa 100  Q
    ||||||||||  |||| || ||||||||||||||||||||||||||||||||||| |||||||| ||| |||  | |||||||||| | ||||   ||||    
T  15092365 tcacttacatggatataccgcaaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaa 15092266  T
Q  101 gttgtaattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaac 200  Q
    ||  || ||||||||||||||||||||||||||||||| || | || |||| ||||| |||  |||| | |||||| |||||||||||||||||||||||    
T  15092265 gtaatagttgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaac 15092166  T
Q  201 tgcaaagttcattccatgtagtttc 225  Q
    |||||||||||||||||||||||||    
T  15092165 tgcaaagttcattccatgtagtttc 15092141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 10614507 - 10614698
Alignment:
Q  30 ctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattc 129  Q
    ||||||||||||  ||||||||||||||||||||| ||| || | | |||||||||| | | ||   ||||||  || |||||||||||||| ||| |||    
T  10614507 ctctctcaattgcatgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttc 10614606  T
Q  130 tttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
    || ||||||||| | || |||| ||||| |||  | |||||||||||||||||||||||||| | ||||||  ||| |||||||||| ||||    
T  10614607 ttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtag 10614698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 13470907 - 13470726
Alignment:
Q  40 tgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattctttgagatca 139  Q
    ||||||||||| ||||||||||||| ||| |||| | |||||||||| | ||||   ||||||  || ||||||||||||||||||||||||||||||||    
T  13470907 tgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatca 13470808  T
Q  140 cagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
     | | || |||| ||||| |||  |||||||||||||||||||||||||||| | ||||||  |||||||||||||| ||||    
T  13470807 tatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtag 13470726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 51764624 - 51764434
Alignment:
Q  31 tctctcaattgtgtgcagttttctaccacatgttccacaccctt-tcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattc 129  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||| |||| ||||||| | |||||  || |||  || |||||||||||| |||||||||    
T  51764624 tctctcaattgtgtgcagttttcaaccacatgtttcactcccttctcct-tgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattc 51764526  T
Q  130 tttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
    ||||||||| || | || |||| |||||||||  |||||  ||||||||  |||||||||||||  ||||||||||||||||||||| ||||    
T  51764525 tttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtag 51764434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 51113974 - 51113775
Alignment:
Q  22 aaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccac 121  Q
    |||||||||||||| | || |||||| |||||||||||||| | ||| |||||  |||||||||  | |||||| |  |||   | ||||||||||||||    
T  51113974 aaattaatctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccac 51113875  T
Q  122 aacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
    ||||| |||| ||||||||| | || ||||||||||||||  |||||||||||||||  ||||||||||| | |||| || |||||||||||||| ||||    
T  51113874 aacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtag 51113775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 51121076 - 51120883
Alignment:
Q  32 ctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattctt 131  Q
    ||||||||||||||||||||||||||||||||| ||| || |||  ||||||||    |||  | || ||    |||||||||||||||| |||| ||||    
T  51121076 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctt 51120977  T
Q  132 tgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttc 225  Q
    |||||| ||| | ||  ||||||||||||| |||||||  |||||||||||||||||||  | | ||||| |||||||||||||||| ||||||    
T  51120976 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttc 51120883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 27922412 - 27922605
Alignment:
Q  20 ccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagccc 119  Q
    ||||| |||||| ||||| ||| |||||||||||||||||||| | ||| |||||   ||||| ||  |||||||| ||||||   |||| |||||||||    
T  27922412 ccaaactaatctttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagccc 27922511  T
Q  120 acaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcatt 213  Q
    ||||||| |||||||||||| | |||| | ||||||||||||  |||||| ||||||||||||||||||||  | ||||||| |||||||||||    
T  27922512 acaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 18315380 - 18315267
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    ||||||||||| || |||| |||||||||||||| | || | ||||||||||||  |||||| ||||||||||||||||||||| | |||||||  ||||    
T  18315380 ttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaag 18315281  T
Q  208 ttcattccatgtag 221  Q
    ||||||||| ||||    
T  18315280 ttcattccacgtag 18315267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 32151293 - 32151401
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    |||||||||||||| |||| |||||||||||||| | || |||||||||||||  ||||||  ||||||||| ||||||||||| | || |||| | |||    
T  32151293 ttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaag 32151392  T
Q  208 ttcattcca 216  Q
    |||||||||    
T  32151393 ttcattcca 32151401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 34936357 - 34936190
Alignment:
Q  21 caaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagccca 120  Q
    |||||| ||||| |||||||||||||| ||||| |||||| | || || |||||  | |||||||    |||||| | ||||  || |||||||||||||    
T  34936357 caaattgatctccctcaattgtgtgcaattttcaaccacacgctcaactcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagccca 34936258  T
Q  121 caacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctc 188  Q
    | |||| |||||| |||  || | || |||| ||||||||| ||||||| |||||||| |||||||||    
T  34936257 cgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctc 34936190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 17628114 - 17628039
Alignment:
Q  115 agcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctcca 190  Q
    |||||| ||||||||||||||||||||   || | || ||||||||| || |||| ||||||||||||||||||||    
T  17628114 agcccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctcca 17628039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 17636581 - 17636402
Alignment:
Q  34 ctcaattgtgtgcagttttctaccacatgttccacac-cctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattcttt 132  Q
    |||||||||||||| ||||||| ||||||  || ||| ||||||  ||||||||   |||||  ||||||   ||||||||||| | |  |||| |||||    
T  17636581 ctcaattgtgtgcaattttctagcacatg--cctcactcctttctcgtgacattaacacaatattcaagtgacaattgcaaaagtctaagacaactcttt 17636484  T
Q  133 gagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattc 214  Q
    ||||||||| | |  | |||||| ||||| | ||| | ||||||||||||||||||||  | ||||||| ||||||||||||    
T  17636483 gagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcattc 17636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 21235598 - 21235658
Alignment:
Q  156 atcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattcca 216  Q
    |||||| | ||||| ||||||||||||||||||||| | ||||||| ||||||||| ||||    
T  21235598 atcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactcca 21235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 21235463 - 21235504
Alignment:
Q  21 caaattaatctctctcaattgtgtgcagttttctaccacatg 62  Q
    |||||| ||||| |||| ||||||||||||||||||||||||    
T  21235463 caaattgatctccctcagttgtgtgcagttttctaccacatg 21235504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 20478267 - 20478076
Alignment:
Q  30 ctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattc 129  Q
    |||||||| |||||||||||||||||| ||||||| | | || ||   ||||||||| |  ||||| |  ||| ||| ||||||||||||||||||||||    
T  20478267 ctctctcagttgtgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagcccacaacaattc 20478168  T
Q  130 tttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtag 221  Q
     ||||||||||||| |  ||||| ||||||||  |||||| ||||||||||||||||||||||| ||||| | ||| ||| |||||| ||||    
T  20478167 cttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctggggaattacaacgtttattccaagtag 20478076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 41901729 - 41901542
Alignment:
Q  21 caaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagccca 120  Q
    |||| |||||| ||||||||| || ||||||||||||||||| | ||| |||||   ||||||||  |||||||  | ||||   |||| |||||| |||    
T  41901729 caaactaatctttctcaattgcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtcca 41901630  T
Q  121 caacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagt 208  Q
    |||||| |||||||||||| | |||| | ||||||||||||  |||||| ||||||||||||||||||||| | ||||||| ||||||    
T  41901629 caacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 32267381 - 32267572
Alignment:
Q  22 aaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccac 121  Q
    |||||||||| ||| | ||| |||||||||||||| ||||| | ||| |||||   ||||| ||  |||||||| | ||||   |||| |||||||||||    
T  32267381 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccac 32267480  T
Q  122 aacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcatt 213  Q
    ||||| |||||||||||| | |||| | ||||||||||||  |||| | |||||||||||| |||||||  | ||||||| |||||||||||    
T  32267481 aacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 41889656 - 41889556
Alignment:
Q  113 aaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcat 212  Q
    ||||||| |||||| |||||||||||  | |||| ||||||||||||||  |||||| ||| ||||||||||||||||  | |||||||  |||||||||    
T  41889656 aaagcccgcaacaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcat 41889557  T
Q  213 t 213  Q
    |    
T  41889556 t 41889556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 37937879 - 37937979
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    |||||||||||||| |||  |||||||||| ||| | || |||| ||||||||  ||||||| || ||||| ||||||||| || | ||||||| |||||    
T  37937879 ttgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaag 37937978  T
Q  208 t 208  Q
    |    
T  37937979 t 37937979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 38267660 - 38267562
Alignment:
Q  111 caaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagtt 209  Q
    |||||||||||  ||  |||||||||| ||| | || || ||||||||||| ||||||| || ||||| ||||||||| || | ||||||| |||||||    
T  38267660 caaaagcccacggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 19468609 - 19468493
Alignment:
Q  105 taattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgca 204  Q
    ||||| |||||| |||||||| ||||||||||||||| |||| ||||||||||||||  |||||| |||||| |||||||||||||||| ||||||| ||    
T  19468609 taattccaaaagtccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactaca 19468510  T
Q  205 aagttcattccatgtag 221  Q
    ||||||| |||| ||||    
T  19468509 aagttcactccaagtag 19468493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 9586632 - 9586729
Alignment:
Q  109 tgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaa 206  Q
    |||||||| |||| ||||||| ||||| ||||| |||| |||||||||| |||   ||||| |||||||||||||||||| |||| ||| ||| ||||    
T  9586632 tgcaaaagtccacgacaattcattgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagcttggggacttcaaa 9586729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 43634902 - 43635007
Alignment:
Q  111 caaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttc 210  Q
    |||||| |||| ||||||||||||| ||||| |||| ||| |||| |||||  |||||| ||||||||||||| |||| |||| ||| |||  |||| ||    
T  43634902 caaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacgcctctagctgggggactctaaaggtc 43635001  T
Q  211 attcca 216  Q
    ||||||    
T  43635002 attcca 43635007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 52082582 - 52082655
Alignment:
Q  117 cccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctcca 190  Q
    |||||||||| |||||||||||||| | |  |||||||||||||   |||| ||||||||||||||||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 52082655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 9581064 - 9581148
Alignment:
Q  111 caaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaac--gcttgtatttgacaagttcaacacctccagct 193  Q
    |||||| |||| ||||||||||||||||||| |||| |||||||||| |||    |||||  |||||||||||||||||| ||||    
T  9581064 caaaagtccacgacaattctttgagatcacataaagcgtttcatcattaacttttttgtacatgacaagttcaacacctctagct 9581148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 7554393 - 7554458
Alignment:
Q  21 caaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatt 86  Q
    ||||||||||||| | | | | |||||||||||||||||||| | ||| |||||| ||||||||||    
T  7554393 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacatt 7554458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 1548619 - 1548423
Alignment:
Q  20 ccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagccc 119  Q
    |||||||||| ||||||| ||| | |||||||||| | | ||||| ||| |||||  |||||| ||||||||||   |   ||   || |||||||||||    
T  1548619 ccaaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagccc 1548520  T
Q  120 acaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattcca 216  Q
    ||||||| ||||||||||||||   || |||||||||||||  ||||||| ||||||||||||||||||||| | ||||| | ||||||||| ||||    
T  1548519 acaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 1548423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 532186 - 532294
Alignment:
Q  113 aaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcat 212  Q
    ||||| ||| ||||||||||||| ||||| ||||  |||||||||||| | |||||| |||||||||||||||||| |||| ||| ||| ||||||||||    
T  532186 aaagctcacgacaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcat 532285  T
Q  213 tccatgtag 221  Q
    |||| ||||    
T  532286 tccaagtag 532294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 1524593 - 1524478
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    |||||||||||||| |||| ||| |||||||| | | || |||||||||||||| ||||||  |||||| |||||||||||||  | ||||||| |||||    
T  1524593 ttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaag 1524494  T
Q  208 ttcattccatgtagtt 223  Q
    ||||||||||| ||||    
T  1524493 ttcattccatgaagtt 1524478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 8187197 - 8187091
Alignment:
Q  109 tgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagt 208  Q
    |||||||||||||||||| ||||||| ||  || |||| |||| ||||||||| ||||||| ||||||||||||||||||||| | || || | ||||||    
T  8187197 tgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagt 8187098  T
Q  209 tcattcc 215  Q
    |||||||    
T  8187097 tcattcc 8187091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 546819 - 547013
Alignment:
Q  22 aaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccac 121  Q
    ||||| |||||||| | || |||||||||||||| |||||||| ||| |||||  |||||||||    ||| |  || |||   |||| |||||||||||    
T  546819 aaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccac 546918  T
Q  122 aacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattcca 216  Q
    ||||| |||||||||||||| | || ||||||||||  ||  |||||  ||||||||||| ||||||||  |  |||||| ||||||||||||||    
T  546919 aacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattcca 547013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 55908904 - 55908718
Alignment:
Q  39 ttgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattctttgagatc 138  Q
    ||||||||||||||| || ||||||| |||||| ||  ||||||| |  | |||||| || ||    | ||| |||||||||||||||||||||||||||    
T  55908904 ttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatc 55908805  T
Q  139 acagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttc 225  Q
    | | | || |||||||||||||| | ||||| ||||||||| |||||||| |  || ||||||  |||||| |||| | ||||||||    
T  55908804 atatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttc 55908718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 553471 - 553554
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccag 191  Q
    ||||||||||||| ||||| ||||||| ||||||  ||| | |||||||||||| ||||||  |||||||||||||||||||||    
T  553471 ttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccag 553554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 55505214 - 55505107
Alignment:
Q  109 tgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagt 208  Q
    |||||||| |||| ||||||||||||| ||||| |||| ||| |||| |||||  |||||| |||||||||||||||||| || | ||| |||  |||||    
T  55505214 tgcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagt 55505115  T
Q  209 tcattcca 216  Q
    ||||||||    
T  55505114 tcattcca 55505107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 12121564 - 12121458
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    ||||||||||||||  |||  ||||||||| || || || ||||||||||||||  |||||| ||||||||||||||| || || | ||||||| |||||    
T  12121564 ttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaag 12121465  T
Q  208 ttcattc 214  Q
    |||||||    
T  12121464 ttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 53761945 - 53761771
Alignment:
Q  39 ttgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattctttgagatc 138  Q
    |||||||||||||||| ||||||||| ||| |||||  | |||||||| | |||||  |  |||  || |||||||||||||| ||||||||| ||||||    
T  53761945 ttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgagatc 53761847  T
Q  139 acagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattcca 216  Q
    |||||  | |||| ||| | |||  | |||  ||||||||||||| |||| |||| ||||||| ||||||||||||||    
T  53761846 acaga--gtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattcca 53761771  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 640908 - 640989
Alignment:
Q  109 tgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctcca 190  Q
    |||||||| ||||  |||||||||||| ||||  | || ||||||||||||||| |||||| ||||||||||||||||||||    
T  640908 tgcaaaagaccacggcaattctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctcca 640989  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 1513514 - 1513407
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    |||||||||||||| ||||  ||||||||| ||  | || ||||||||||||||  |||||  ||||||||||||||| || || | ||||||| |||||    
T  1513514 ttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaag 1513415  T
Q  208 ttcattcc 215  Q
    ||||||||    
T  1513414 ttcattcc 1513407  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 8184134 - 8184031
Alignment:
Q  111 caaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttc 210  Q
    |||||||||||||||| ||||||||||  || | || | |  ||||||||| ||||||| |||||||||||||||||| || |  |||||| ||||||||    
T  8184134 caaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttc 8184035  T
Q  211 attc 214  Q
    ||||    
T  8184034 attc 8184031  T

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Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 1537874 - 1537764
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    |||||||||||||| ||||  ||||||||| ||| | || ||||  |||| |||  |||||| ||||||||||||||| || || | ||||||| |||||    
T  1537874 ttgcaaaagcccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaag 1537775  T
Q  208 ttcattccatg 218  Q
    |||||||||||    
T  1537774 ttcattccatg 1537764  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 1519203 - 1519143
Alignment:
Q  154 tcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattc 214  Q
    |||||||| ||||||| |||||||||||||||||| || | ||||||| ||||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 1552873 - 1552761
Alignment:
Q  109 tgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagt 208  Q
    ||||||||||||| |||||||||||| ||||||   || |||||||||| ||   |||||| |||||| |||||||| ||||| | ||||| | ||||||    
T  1552873 tgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagt 1552774  T
Q  209 tcattccatgtag 221  Q
    ||| |||| ||||    
T  1552773 tcagtccaagtag 1552761  T

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Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 7225990 - 7225886
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 207  Q
    ||||||||| ||||||||| ||||||| ||||||  |||   ||  |||||||| ||||||| |||||||||||| |||||||  ||| ||||| |||||    
T  7225990 ttgcaaaagtccacaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaag 7225891  T
Q  208 ttcat 212  Q
    |||||    
T  7225890 ttcat 7225886  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 566182 - 566239
Alignment:
Q  109 tgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttg 166  Q
    ||||||||||||| ||| | ||||||||||||| | || |||||||||||||||||||    
T  566182 tgcaaaagcccacgacagtactttgagatcacatagagtgtttcatcatcaacgcttg 566239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 1508110 - 1508033
Alignment:
Q  108 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacac 185  Q
    |||||||||||||| ||||  ||||||||| ||| | || ||||||||||||||  | |||| |||||||||||||||    
T  1508110 ttgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 1600453 - 1600518
Alignment:
Q  150 ttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattcc 215  Q
    |||||| ||||| ||||||| ||||||||||||||||||||| |   ||||| |||||||||||||    
T  1600453 ttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcc 1600518  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 1524677 - 1524637
Alignment:
Q  21 caaattaatctctctcaattgtgtgcagttttctaccacat 61  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  1524677 caaattaatctctctcagttgtgtgcagttttctatcacat 1524637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 7307853 - 7307957
Alignment:
Q  109 tgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagt 208  Q
    |||||||||| ||||||| |||||||||||| |   || | ||||||||||||   ||||| |||||||||||| |||||||  | |||||||  |||||    
T  7307853 tgcaaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagt 7307952  T
Q  209 tcatt 213  Q
    |||||    
T  7307953 tcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 659707 - 659799
Alignment:
Q  112 aaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaa 206  Q
    |||| |||| |||||||| ||||||||||| |  | ||||||| || ||| ||||||| |||||||||||||||||| || | ||||||| ||||    
T  659707 aaaaccccaaaacaattccttgagatcacata--gtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaa 659799  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 12116640 - 12116602
Alignment:
Q  150 ttcatcatcaacgcttgtatttgacaagttcaacacctc 188  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  12116640 ttcatcatcaacacttgtatgtgacaagttcaacacctc 12116602  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 553380 - 553425
Alignment:
Q  17 cccccaaattaatctctctcaattgtgtgcagttttctaccacatg 62  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||    
T  553380 cccccaaatcgatctctctaagttgtgtgcagttttctaccacatg 553425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 570256 - 570297
Alignment:
Q  21 caaattaatctctctcaattgtgtgcagttttctaccacatg 62  Q
    |||||| ||||| |||| ||||||||||||||||||||||||    
T  570256 caaattgatctccctcagttgtgtgcagttttctaccacatg 570297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 45245279 - 45245084
Alignment:
Q  21 caaattaatctctctcaattgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagccca 120  Q
    |||||| |||||| | | ||||||||| |||||||||||||||| ||| |||||  |||||||||  | ||| || |  | |  || |||||||||||||    
T  45245279 caaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 45245180  T
Q  121 caacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattcca 216  Q
    | |||| ||||||||||||||   || ||||||||||||||  |||| | |||||| ||||||||||| || |  |||||| ||||||| ||||||    
T  45245179 cgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattcca 45245084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 1037840 - 1037654
Alignment:
Q  39 ttgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattctttgagatc 138  Q
    ||||||||||||||| || ||||||| |||||| ||  ||||||| |  | |||||| || ||    | ||| |||||||||||||||||||||||||||    
T  1037840 ttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatc 1037741  T
Q  139 acagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttc 225  Q
    | | | || |||||||||||||| | ||||| ||||||||| |||||||| |  || ||||||  |||||| |||| | ||||||||    
T  1037740 atatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttc 1037654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 32785856 - 32785773
Alignment:
Q  131 ttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattc 214  Q
    ||||||||||| |||| | |||||||||||  ||||||| |||||||||||||||||| || | |||| ||  |||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattc 32785773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 800 - 614
Alignment:
Q  39 ttgtgtgcagttttctaccacatgttccacaccctttcctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattctttgagatc 138  Q
    |||||||||||||||||| ||||||| |||||| ||  || |||| |  | |||||| || |||   | ||| || ||||||||||||||||| ||||||    
T  800 ttgtgtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgagatc 701  T
Q  139 acagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttc 225  Q
    | | | || ||||||||||| || ||||||| ||||||||| |||||||| |  || ||||||  |||||| |||| | ||||||||    
T  700 atatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttc 614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 1560 - 1466
Alignment:
Q  122 aacaattctttgagatcacagaaagagtttcatcatca---acgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcatt 213  Q
    |||||||||||||||||||| | || ||||||||||||   ||  ||||||||||||||| ||||||||| ||||  |||||| |||||||||||    
T  1560 aacaattctttgagatcacatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatt 1466  T

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Target: scaffold0041 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 39177 - 39256
Alignment:
Q  109 tgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctc 188  Q
    ||||||||||||| |||| |||||||||||||| |||| |||||||||| |||  |||||  || |||||||||||||||    
T  39177 tgcaaaagcccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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