View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10136_low_18 (Length: 207)

Name: NF10136_low_18

Description: NF10136

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10136_low_18

[»] chr2 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr2 (Bit Score: 189; Significance: 1e-103; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 189; E-Value: 1e-103

Query Start/End: Original strand, 7 - 195

Target Start/End: Original strand, 34956227 - 34956415

Alignment:

Q	7	agcagagacacttcatatcaggcatgttgtactctaatggtaaacagtgatgttcaattatacttaaaagcataaacacttcaaagtaaaatgatacaaa	106	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34956227	agcagagacacttcatatcaggcatgttgtactctaatggtaaacagtgatgttcaattatacttaaaagcataaacacttcaaagtaaaatgatacaaa	34956326	T

Q	107	tcatgctaatttaaattaaatataatgtgtaccttaacaaggctatctgtatcacgatctccataataagactcatgctcatgatgtcc	195	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34956327	tcatgctaatttaaattaaatataatgtgtaccttaacaaggctatctgtatcacgatctccataataagactcatgctcatgatgtcc	34956415	T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 40; E-Value: 0.00000000000007

Query Start/End: Original strand, 119 - 197

Target Start/End: Complemental strand, 31391094 - 31391018

Alignment:

Q	119	aaattaaatataatgtgtaccttaacaaggctatctgtatcacgatctccataataagactcatgctcatgatgtccat	197	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	31391094	aaattaaatat--tgtgaaccttgactaggctttctgtatcacggtctccataataggactcatgttcatgatgtccat	31391018	T

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