View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10136_low_4 (Length: 412)
Name: NF10136_low_4
Description: NF10136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10136_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 44648261 - 44648657
Alignment:
| Q |
1 |
actccttcaatgaggtccacacatgaaagtgaaagcatagagtttagtttctattgagaagttcttctatcatctgcaaagcaattttctgttcatcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44648261 |
actccttcaatgaggtccacacatgaaagttaaagcatagagtttagtttctattgagaagttcttctatcatctgcaaagcaattttctgttcatcatc |
44648360 |
T |
|
| Q |
101 |
caaaccatttttacttaattcctctggctttgccttctctggcacagaagcacnnnnnnncctttctaactcaaccatcataatccaatttgattccgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44648361 |
caaaccatttttacttaattcctctggctttgccttctctggcacagaagcactttttttcctttctaactcaaccatcataatccaatttgattccgaa |
44648460 |
T |
|
| Q |
201 |
cgaggacctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtgaaggtgaaggaaacttgcaacacttcctta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44648461 |
cgaggacctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtgaaggtgaaggaaacttgcaacacttcctta |
44648560 |
T |
|
| Q |
301 |
acttcgcactaagaactgcagaaaatgctttggaagaagttgaagaagatgaaatagaattggtttgattttccacattaattggaaagttagtttt |
397 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44648561 |
actttgcactaagaactgcagaaaatgctttggaagaagttgaagaagatgaaatagaattggtttgattttccacattaattggaaagttagtttt |
44648657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 2428397 - 2428518
Alignment:
| Q |
171 |
tcaaccatcataatccaatttgattccgaacgaggacctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtg |
270 |
Q |
| |
|
||||||||||| ||||| | || ||||||||||| ||||| | ||||||||||||||||| |||||||||||| | |||||||| ||||||||||| | |
|
|
| T |
2428397 |
tcaaccatcatgatccagctcgagtccgaacgaggtcctgctcttttctgccacactccaaagtgtgaattctcagtgtcaagccttagacaagtgaggg |
2428496 |
T |
|
| Q |
271 |
aaggtgaaggaaacttgcaaca |
292 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
2428497 |
aaggtgaaggtgacttgcaaca |
2428518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 2480354 - 2480418
Alignment:
| Q |
207 |
cctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtga |
271 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||||| |||||||||||| |
|
|
| T |
2480354 |
cctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaagtgagtga |
2480418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University