View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10136_low_6 (Length: 351)
Name: NF10136_low_6
Description: NF10136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10136_low_6 |
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| [»] scaffold0069 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 10074108 - 10074414
Alignment:
| Q |
17 |
cagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagttgggagaatgttctttgccaagcg |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| |
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| T |
10074108 |
cagtctctgcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgttggttgtgtctatttgggagaatgttctttgccaagcg |
10074207 |
T |
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| Q |
117 |
ccacatgaagttttttatcttgttggggattggtgct------------ttccatagtctttcgttcctgtgatgggatggtccgggctggagattttct |
204 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||| ||||||||| |
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| T |
10074208 |
ccacatgaagtttttgatcttgttggggattggtgctttgcaaatttcattccatagtctttcgttcctgcgttgggatggtcctagctgaagattttct |
10074307 |
T |
|
| Q |
205 |
ttgattttgttcaa-aagaggtatgctgatctgatctgacagtgtagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattggga |
303 |
Q |
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| T |
10074308 |
ctgattctgctcaataagtggtatgct--------------gtgtagcaaccatttttctcccagcgccagcaaatcttgtcttttggaagggattggga |
10074393 |
T |
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| Q |
304 |
tataggaatacttacaatttt |
324 |
Q |
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||||||||||||||||||||| |
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| T |
10074394 |
tataggaatacttacaatttt |
10074414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 10136160 - 10136199
Alignment:
| Q |
17 |
cagtctcagcttcagaatgacataaagggcaggaggtgtc |
56 |
Q |
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| T |
10136160 |
cagtctcagcttcagaatgacataaagggccggaggtgtc |
10136199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 325
Target Start/End: Complemental strand, 36092012 - 36091742
Alignment:
| Q |
63 |
aatacctttcctctgtaggttatgtctagttgggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattggtg----------- |
151 |
Q |
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| T |
36092012 |
aatacctttcctctgcagattttgcctagttgggaggatgttctttgccaagcgccacatgaagttcttcaccttgttgggaattgatgccttccaaatt |
36091913 |
T |
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| Q |
152 |
-ctttccatagtctttcgttcctgtgatgggatggtccgggctggagattttctttgattttgttcaa-aagaggtatgctgatctgatctgacagtgta |
249 |
Q |
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| T |
36091912 |
tccttccatagtctctcgttcctgtggtgggacggccctggttggaggttttctctaatcttgctcaataagtgatagg-----ctgacctgacagtgta |
36091818 |
T |
|
| Q |
250 |
gcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaattttt |
325 |
Q |
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||||||||||||||||| |||||||| | |||||||| || || ||||| |||| ||| ||||| ||||||||| |
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| T |
36091817 |
acaaccatttttctcccaatgccagcatcttttgtctttggggagagattgtgatagagggatactcacaattttt |
36091742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 29783284 - 29783361
Alignment:
| Q |
248 |
tagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaattttt |
325 |
Q |
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||||| |||| ||||||||| ||||||||||| || ||| | |||||||| || |||||||| ||||||||||||||| |
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| T |
29783284 |
tagcagccatctttctcccaatgccagcaaattttatctctaggaagggaatgtgatatagggatacttacaattttt |
29783361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 29783119 - 29783159
Alignment:
| Q |
91 |
gttgggagaatgttctttgccaagcgccacatgaagttttt |
131 |
Q |
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| T |
29783119 |
gttgggaggatgttctttgccaaacgccacatgaagttttt |
29783159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 65346 - 65466
Alignment:
| Q |
28 |
tcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagttgggagaatgttctttgccaagcgccacatgaagt |
127 |
Q |
| |
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|||| |||||||| |||||| | ||||| ||| ||||||||||||||| || || || ||||||||||| |||||||||||||||| ||||||||||| |
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| T |
65346 |
tcagcatgacatatagggcataaagtgtcgagagaaatacctttcctctgcagattttgcctagttgggaggatgttctttgccaagcaccacatgaagt |
65445 |
T |
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| Q |
128 |
tttttatcttgttggggattg |
148 |
Q |
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| || | ||||||||| |||| |
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| T |
65446 |
tcttcaccttgttgggaattg |
65466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 65569 - 65652
Alignment:
| Q |
242 |
acagtgtagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaattttt |
325 |
Q |
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|||||||| ||||||||||||||||| ||||| || || |||||||| || || |||||||| | ||| ||||| ||||||||| |
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| T |
65569 |
acagtgtaacaaccatttttctcccaatgccaacatattttgtctttggggagagattgggagagagggatactcacaattttt |
65652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 20386737 - 20386857
Alignment:
| Q |
28 |
tcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagttgggagaatgttctttgccaagcgccacatgaagt |
127 |
Q |
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|||| |||||||| |||||| | ||||| ||| ||||||||||||||| || || || ||||||||||| |||||||||||||||| ||||||||||| |
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| T |
20386737 |
tcagcatgacatatagggcataaagtgtcgagagaaatacctttcctctgcagattttgcctagttgggaggatgttctttgccaagcaccacatgaagt |
20386836 |
T |
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| Q |
128 |
tttttatcttgttggggattg |
148 |
Q |
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| || | ||||||||| |||| |
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| T |
20386837 |
tcttcaccttgttgggaattg |
20386857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 20386960 - 20387043
Alignment:
| Q |
242 |
acagtgtagcaaccatttttctcccagtgccagcaaatcttgtcttttggaagggattgggatataggaatacttacaattttt |
325 |
Q |
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|||||||| ||||||||||||||||| ||||| || || |||||||| || || |||||||| | ||| ||||| ||||||||| |
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| T |
20386960 |
acagtgtaacaaccatttttctcccaatgccaacatattttgtctttggggagagattgggagagagggatactcacaattttt |
20387043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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