View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10137_low_1 (Length: 709)

Name: NF10137_low_1
Description: NF10137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10137_low_1
NF10137_low_1
[»] chr8 (9 HSPs)
chr8 (366-693)||(13094885-13095220)
chr8 (528-693)||(13113238-13113403)
chr8 (528-693)||(13102397-13102562)
chr8 (637-693)||(18671221-18671277)
chr8 (281-328)||(13094834-13094881)
chr8 (125-190)||(4860833-4860898)
chr8 (125-190)||(9881972-9882037)
chr8 (125-190)||(40387237-40387302)
chr8 (125-190)||(42145042-42145107)
[»] chr4 (8 HSPs)
chr4 (125-262)||(4529427-4529564)
chr4 (125-263)||(18874518-18874656)
chr4 (125-190)||(11150050-11150115)
chr4 (125-190)||(15703161-15703226)
chr4 (125-190)||(23972568-23972633)
chr4 (125-190)||(13885566-13885631)
chr4 (125-190)||(19613435-19613500)
chr4 (142-190)||(25127725-25127773)
[»] chr2 (5 HSPs)
chr2 (125-259)||(20178276-20178411)
chr2 (125-190)||(22385216-22385281)
chr2 (125-190)||(16091970-16092035)
chr2 (125-190)||(16933306-16933371)
chr2 (238-266)||(34891889-34891917)
[»] chr6 (4 HSPs)
chr6 (125-190)||(19770538-19770603)
chr6 (173-259)||(22468433-22468520)
chr6 (129-190)||(19565669-19565730)
chr6 (125-190)||(19568300-19568365)
[»] scaffold0024 (2 HSPs)
scaffold0024 (125-190)||(106418-106483)
scaffold0024 (125-190)||(108785-108850)
[»] chr7 (3 HSPs)
chr7 (125-190)||(11510159-11510224)
chr7 (125-190)||(18149148-18149213)
chr7 (125-190)||(34705401-34705466)
[»] scaffold0281 (1 HSPs)
scaffold0281 (125-190)||(303-368)
[»] scaffold0103 (1 HSPs)
scaffold0103 (125-190)||(16905-16970)
[»] chr3 (8 HSPs)
chr3 (125-190)||(3473323-3473388)
chr3 (125-185)||(15778816-15778876)
chr3 (129-190)||(39729180-39729241)
chr3 (125-180)||(3414021-3414076)
chr3 (125-190)||(3585628-3585693)
chr3 (126-190)||(18539636-18539703)
chr3 (142-190)||(19595448-19595496)
chr3 (60-124)||(31800432-31800499)
[»] chr1 (4 HSPs)
chr1 (125-190)||(23633762-23633827)
chr1 (142-190)||(89611-89659)
chr1 (14-50)||(47445066-47445102)
chr1 (142-190)||(52272379-52272427)
[»] scaffold0498 (1 HSPs)
scaffold0498 (125-190)||(11751-11816)
[»] scaffold0043 (1 HSPs)
scaffold0043 (125-180)||(67267-67322)
[»] chr5 (3 HSPs)
chr5 (125-190)||(32039373-32039438)
chr5 (142-190)||(29497596-29497644)
chr5 (14-50)||(36681872-36681908)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 366 - 693
Target Start/End: Original strand, 13094885 - 13095220
Alignment:
Q  366 tatttacacaacatcacataaattacctaccaagatattgacatagcagagccaatgatccatatagatacaacatatgatcatgtaaccaacatcaaaa 465  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||| ||||  |||||||||||||||||||||||||||| ||||||| |||||||| |    
T  13094885 tatttacacagcataacataaattacctaccaagatattaacatagtagagttaatgatccatatagatacaacatatgattatgtaacgaacatcaaga 13094984  T
Q  466 tttataacactaaa--tgctctgcaaagtcttttgttttacttcacat----gtcaccttcactca--ca--agtcatcatgaccttggaattgcagtga 555  Q
    ||||||||||||||  ||||||||| |||  |||| | | ||||||||    ||||||| ||||||  ||  |||| | |||||||||||||||||  ||    
T  13094985 tttataacactaaaaatgctctgcatagtggtttgatctgcttcacatatatgtcacct-cactcatgcatgagtctt-atgaccttggaattgcatgga 13095082  T
Q  556 gaggaaggcccttgtccaagtgaagggtaaacatgaccttataagtcacattttgtgttccatttgccaatttaaatttgaagaaattaagaagacacat 655  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13095083 gagggaggcccttgtccaagtgaagggtaaacattaccttataagtcacattttgtgttccatttgccaatttaaatttgaagaaattaagaacacacat 13095182  T
Q  656 tgcaactattttcatttgtctgtatgcaaagtccttcc 693  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13095183 tgcaactattttcatttgtctgtatgcaaagtccttcc 13095220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 528 - 693
Target Start/End: Original strand, 13113238 - 13113403
Alignment:
Q  528 agtcatcatgaccttggaattgcagtgagaggaaggcccttgtccaagtgaagggtaaacatgaccttataagtcacattttgtgttccatttgccaatt 627  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13113238 agtcatcatgaccttggaattgcagtgagagggaggcccttgtccaagtgaagggtaaacatgaccttataagtcacattttgtgttccatttgccaatt 13113337  T
Q  628 taaatttgaagaaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttcc 693  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13113338 taaatttgaagaaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttcc 13113403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 528 - 693
Target Start/End: Original strand, 13102397 - 13102562
Alignment:
Q  528 agtcatcatgaccttggaattgcagtgagaggaaggcccttgtccaagtgaagggtaaacatgaccttataagtcacattttgtgttccatttgccaatt 627  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13102397 agtcatcatgaccttggaattgcatggagagggaggcccttgtccaagtgaagggtaaacatgaccttataagtcacattttgtgttccatttgccaatt 13102496  T
Q  628 taaatttgaagaaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttcc 693  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13102497 taaatttgaagaaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttcc 13102562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 637 - 693
Target Start/End: Complemental strand, 18671277 - 18671221
Alignment:
Q  637 agaaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttcc 693  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18671277 agaaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttcc 18671221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 13094834 - 13094881
Alignment:
Q  281 aaagaaagaagaaagcaaaacagttaagttgcaaagtttactaaacag 328  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  13094834 aaagaaagaataaagcaaaacagttaagttgcaaagtttactaaacag 13094881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 4860833 - 4860898
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  4860833 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattctcaccctcta 4860898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 9882037 - 9881972
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  9882037 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattctcaccctcta 9881972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 40387302 - 40387237
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||| |||||||||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  40387302 gttcttttatttgaatttatacatgtgtttatgcatctcttatgttgaatatattctcaccctcta 40387237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 42145107 - 42145042
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||| |||| || |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  42145107 gttcttttgtctggatctatacatgtgtttatgcatttcttatgttgaatatattctcaccctcta 42145042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 125 - 262
Target Start/End: Complemental strand, 4529564 - 4529427
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttctattggattgtaccctcgcttggtacatattcgcaa 224  Q
    |||||||||| ||||| |||| |||||||||||||| |||||||||||||||||||||| | ||| ||| |||||||||||| ||||||||||||||||     
T  4529564 gttcttttatttgaatctatacatgtgcttatgcatctcttatgttggatatattctcatcatctgttgaattgtaccctcgtttggtacatattcgcag 4529465  T
Q  225 gaagaagaaactaagtagcagtgagtctcggaggatgg 262  Q
     ||||||||||| |||||||||||||||||||||||||    
T  4529464 aaagaagaaacttagtagcagtgagtctcggaggatgg 4529427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 125 - 263
Target Start/End: Complemental strand, 18874656 - 18874518
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttctattggattgtaccctcgcttggtacatattcgcaa 224  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |||  |||||||||||||||||||| |||||||| |||| ||     
T  18874656 gttcttttatctgaatttatacatgtgcttatgcatctcttatgttggatattttcccactatctattggattgtaccctcgtttggtacaaattcccat 18874557  T
Q  225 gaagaagaaactaagtagcagtgagtctcggaggatggc 263  Q
    |||||||  ||| |||| |||||||||||||||||||||    
T  18874556 gaagaagtgacttagtaacagtgagtctcggaggatggc 18874518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 11150115 - 11150050
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  11150115 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattctcaccctcta 11150050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 15703226 - 15703161
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  15703226 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattctcaccctcta 15703161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 23972633 - 23972568
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  23972633 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattctcaccctcta 23972568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 13885566 - 13885631
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    ||||||||| ||| ||||||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  13885566 gttcttttacctggatttatacatgtgtttatgcatttcttatgttgaatatattctcaccctcta 13885631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 19613435 - 19613500
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||| || || |||| ||||| |||| ||| |||| ||||||||||||||||||| ||||    
T  19613435 gttcttttatttggatctatacatgtgattatacatctcttgtgttggatatattctcaccctcta 19613500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 25127725 - 25127773
Alignment:
Q  142 tatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  25127725 tatacatgtgtttatgcatttcttatgttgaatatattctcaccctcta 25127773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 125 - 259
Target Start/End: Complemental strand, 20178411 - 20178276
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta-ttggattgtaccctcgcttggtacatattcgca 223  Q
    |||||||||||||||| |||| | ||| |||||||| |||| ||||||||||||||||||||| || ||||| ||| |||||||||||||||||| |  |    
T  20178411 gttcttttatctgaatatatacacgtgtttatgcatctcttgtgttggatatattctcaccttatatttggactgtgccctcgcttggtacatatacata 20178312  T
Q  224 agaagaagaaactaagtagcagtgagtctcggagga 259  Q
     |||||||||||| |||||||| |||||| ||||||    
T  20178311 ggaagaagaaacttagtagcagcgagtcttggagga 20178276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 22385281 - 22385216
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| |||||||||||||| |||| ||||||||||||||||||| ||||    
T  22385281 gttcttttatctgaatctatacatgtgcttatgcatctcttgtgttggatatattctcaccctcta 22385216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 16092035 - 16091970
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    ||||||||||||| || |||| ||||| |||||||| |||| ||||||||||||||||||| ||||    
T  16092035 gttcttttatctggatctatacatgtgattatgcatctcttgtgttggatatattctcaccctcta 16091970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 16933306 - 16933371
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| |||||  ||||||| |||| ||||||||||||||||||| ||||    
T  16933306 gttcttttatctgaatctatacatgtggctatgcatctcttgtgttggatatattctcaccctcta 16933371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 34891917 - 34891889
Alignment:
Q  238 agtagcagtgagtctcggaggatggcatt 266  Q
    |||||||||||||||||||||||||||||    
T  34891917 agtagcagtgagtctcggaggatggcatt 34891889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 19770538 - 19770603
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||||||||||||||    
T  19770538 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattctcaccttcta 19770603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 22468520 - 22468433
Alignment:
Q  173 atatattctcacct-tctattggattgtaccctcgcttggtacatattcgcaagaagaagaaactaagtagcagtgagtctcggagga 259  Q
    |||||||||||||  ||||||||| ||||||||||||||||||| || || | |||||| |||||| |||| |||||||||| |||||    
T  22468520 atatattctcacccctctattggactgtaccctcgcttggtacagatacgtaggaagaaaaaactacgtagtagtgagtctcagagga 22468433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 19565669 - 19565730
Alignment:
Q  129 ttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    ||||||||| || |||| ||||| |||||||| ||||||||||  |||||||||||| ||||    
T  19565669 ttttatctggatctatacatgtgtttatgcatctcttatgttgagtatattctcaccctcta 19565730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 19568300 - 19568365
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    ||||||||||||  || |||| ||||| |||||||| ||||||||||  |||||||||||| ||||    
T  19568300 gttcttttatcttgatctatacatgtgtttatgcatctcttatgttgagtatattctcaccctcta 19568365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 106483 - 106418
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  106483 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattctcaccctcta 106418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 108850 - 108785
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||| ||||| ||||    
T  108850 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattatcaccctcta 108785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 11510159 - 11510224
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  11510159 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattctcaccctcta 11510224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 18149148 - 18149213
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  18149148 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattctcaccctcta 18149213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 34705466 - 34705401
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    ||||||||||||| || |||| ||||| |||||||| |||| ||||||||||||||||||| ||||    
T  34705466 gttcttttatctggatatatacatgtgattatgcatctcttgtgttggatatattctcaccctcta 34705401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 368 - 303
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| || || |||||||| |||||||||| ||||||||||||| ||||    
T  368 gttcttttatctgaatctatacatttgtttatgcatctcttatgttgaatatattctcaccctcta 303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 16970 - 16905
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| |||||  ||||||| |||| ||||||||||||||||||| ||||    
T  16970 gttcttttatctgaatctatacatgtggctatgcatctcttgtgttggatatattctcaccctcta 16905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 3473323 - 3473388
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| ||||| || |||||||||| ||||||||||||| ||||    
T  3473323 gttcttttatctgaatctatacatgtgtttatgtatctcttatgttgaatatattctcaccctcta 3473388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 15778816 - 15778876
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcacc 185  Q
    ||||||||||||| || |||| ||||| |||||||| |||| |||||||||||||||||||    
T  15778816 gttcttttatctggatctatacatgtgattatgcatctcttgtgttggatatattctcacc 15778876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 39729180 - 39729241
Alignment:
Q  129 ttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    ||||||| |||| |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  39729180 ttttatccgaatctatacatgtgtttatgcatctcttatgttgaatatattctcaccctcta 39729241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 3414021 - 3414076
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattc 180  Q
    |||| ||||| ||||| |||| |||||||||||||| |||| ||||||||||||||    
T  3414021 gttcgtttatttgaatatatacatgtgcttatgcatctcttgtgttggatatattc 3414076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 3585693 - 3585628
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||| ||||| |||| ||||| |||||||| ||||| | || ||||||||||||| ||||    
T  3585693 gttcttttatttgaatctatacatgtgtttatgcatttcttagggtgaatatattctcaccctcta 3585628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 18539636 - 18539703
Alignment:
Q  126 ttcttttatctgaatttatatatgtgcttat---gcatatcttatgttggatatattctcaccttcta 190  Q
    ||||||||||||||| |||| ||||| ||||   |||| |||||||||| ||||||||||||| ||||    
T  18539636 ttcttttatctgaatctatacatgtggttattatgcatctcttatgttgaatatattctcaccctcta 18539703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 19595496 - 19595448
Alignment:
Q  142 tatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  19595496 tatacatgtgtttatgcatttcttatgttgaatatattctcaccctcta 19595448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 31800432 - 31800499
Alignment:
Q  60 gtttcttaaaggtcatggg-tttttggacaaaaattacaatttcggggg--tttttgcctattcactc 124  Q
    ||||||||||  ||||||| ||||| ||| ||| |||||||||||||||  |||||||||||||||||    
T  31800432 gtttcttaaaaatcatgggattttttgacgaaagttacaatttcgggggagtttttgcctattcactc 31800499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 23633762 - 23633827
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||| ||||||| ||||| ||||    
T  23633762 gttcttttatctgaatctatacatgtgtttatgcatctcttatgttgaatatattatcaccctcta 23633827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 89659 - 89611
Alignment:
Q  142 tatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  89659 tatagatgtgtttatgcatttcttatgttgaatatattctcaccctcta 89611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 47445102 - 47445066
Alignment:
Q  14 aggggggtaactgactgacgtttgacaatttcatggg 50  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  47445102 aggggggtaattgactaacgtttgacaatttcatggg 47445066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 52272427 - 52272379
Alignment:
Q  142 tatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  52272427 tatacatgtgtttatgcatttcttatgttgaatatattctcaccctcta 52272379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 11816 - 11751
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||||||||||||||| | || ||||| |||||||| |||| ||||| ||||||||||||| ||||    
T  11816 gttcttttatctgaatctgtacatgtgtttatgcatctcttctgttgaatatattctcaccctcta 11751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 67267 - 67322
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattc 180  Q
    |||||||||||| ||| |||| ||||| |||||||| |||| ||||||||||||||    
T  67267 gttcttttatctaaatctatacatgtgtttatgcatctcttgtgttggatatattc 67322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 32039438 - 32039373
Alignment:
Q  125 gttcttttatctgaatttatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    ||||||||||||  || |||| ||||| |||||||| |||| ||||||||| ||||||||| ||||    
T  32039438 gttcttttatctcgatctatacatgtgattatgcatctcttttgttggataaattctcaccctcta 32039373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 29497596 - 29497644
Alignment:
Q  142 tatatatgtgcttatgcatatcttatgttggatatattctcaccttcta 190  Q
    |||| ||||| |||||||| |||||||||| ||||||||||||| ||||    
T  29497596 tatacatgtgtttatgcatttcttatgttgaatatattctcaccctcta 29497644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 36681872 - 36681908
Alignment:
Q  14 aggggggtaactgactgacgtttgacaatttcatggg 50  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  36681872 aggggggtaattgactaacgtttgacaatttcatggg 36681908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University