View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10137_low_10 (Length: 341)
Name: NF10137_low_10
Description: NF10137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10137_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 73 - 332
Target Start/End: Original strand, 42690779 - 42691038
Alignment:
| Q |
73 |
aacacaaagtaggatcttgtggnnnnnnngacaaagtaggaaatttgaaaaccaaatcctcttctctcccaaatacgtccacacgttagattgccattat |
172 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42690779 |
aacacaaagtaggatcttgtggaaaaaaagacaaagtaggaaatttgaaaaccaaatcctcttctctcccaaatacgtccacacgttagattgccattat |
42690878 |
T |
|
| Q |
173 |
cttatccctcaaataagaggccatcgcgttcctctccactcaatgctatcagtatcacaccttcttcttcccaccaatcacagcaaatacaaaacaaaga |
272 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42690879 |
cttatccctcaaataagaggccatcgtgttcctctccactcaatgctatcagtatcacaccttcttcttcccaccaatcacagcaaatacaaaacaaaga |
42690978 |
T |
|
| Q |
273 |
aacgcaaacaaaacactctcttcatttcatttcactaaccacaccacactaatttcttct |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42690979 |
aacgcaaacaaaacactctcttcatttcatttcactaaccacaccacactaatttcttct |
42691038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University