View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10137_low_12 (Length: 310)
Name: NF10137_low_12
Description: NF10137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10137_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 16963302 - 16962989
Alignment:
| Q |
1 |
tcacattgcaagaatttaacagtgttagccgctaaggcaagatttcagaagccgaaaaaatcagagatgcaactaggagtattatttggtattattgga- |
99 |
Q |
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| T |
16963302 |
tcacattgcaagaattcaacggtgttagccgctaagccgagatttgagaagccgaaaaaatcaatgatgcagctaggagtattatttggtattattggag |
16963203 |
T |
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| Q |
100 |
-----------attgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcagaaagagaagatagatctgttgatatttcaagaga |
188 |
Q |
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| T |
16963202 |
gttttgttggaattgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcagaaagagaagatagatctgttgatatttcaagaga |
16963103 |
T |
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| Q |
189 |
atcaagactaaatatttatgcaagtaaggccataattacatacacataaacatttcatat--tagtgcacaagttaaatttagatcatatttttcatttc |
286 |
Q |
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| T |
16963102 |
atcaagactaaatatttatgcaagtaaggccataattacatacacataaacatttcatattgtagtgcacaagttaaatttagatcatatttttcatttc |
16963003 |
T |
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| Q |
287 |
atattagtcctttg |
300 |
Q |
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| T |
16963002 |
atattagtcctttg |
16962989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16216043 - 16215792
Alignment:
| Q |
1 |
tcacattgcaagaatttaacagtgttagccgctaaggcaagatttcagaagccgaaaaaatcagagatgcaactaggagtattatttggtattattgg-- |
98 |
Q |
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| T |
16216043 |
tcacattgcaagaattcaacagtgttagccgctgagacgagatttgataagccgaaaaaatcaatgatgcaactaggagtattatttggtattattggag |
16215944 |
T |
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| Q |
99 |
----------aattgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcagaaagagaag---------------atagatctgt |
173 |
Q |
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| T |
16215943 |
gttttgttgtaattgtagggcttttgattctactctttctgttcattttgagaaagtctaaagcagaaagagaagatagtaaaatagatcatagatctgt |
16215844 |
T |
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| Q |
174 |
tgatatttcaagagaatcaagactaaatatttatgcaagtaaggccataatt |
225 |
Q |
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| T |
16215843 |
tgatatttcaagagaatcaagaccaaatatttatgcaagtaaggccacaatt |
16215792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 48892080 - 48892027
Alignment:
| Q |
97 |
ggaattgtagggcttttgattctactctttctgttcattttgagaaagtccaaa |
150 |
Q |
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| T |
48892080 |
ggaattgcagggcttttgattatattttttctgttcattttgagaaagtccaaa |
48892027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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