View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10137_low_13 (Length: 298)
Name: NF10137_low_13
Description: NF10137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10137_low_13 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0380 (2 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 49952989 - 49953272
Alignment:
| Q |
1 |
agttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttga |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
49952989 |
agttacatccaaaatcttatgacattataagtcatctcacttatatattgttcaatatctattatatgccattcaatgtgttattttaatccacacttga |
49953088 |
T |
|
| Q |
101 |
cacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatat |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49953089 |
cacattaacatctctcaattaaatatgagactcttcgtgtccgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagcgtatatgatat |
49953188 |
T |
|
| Q |
201 |
caccgttgggacttacgggggagacaacacttgtgtgattcg-aacattgtagaaaaaacaaccacacaagtgagaatgatgtc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49953189 |
caccgttgggacttacgggggagacaacacttgtgtgattcgaaacattgcagaaaaaacaaccacacaagtgagaatgatgtc |
49953272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 39974966 - 39974683
Alignment:
| Q |
1 |
agttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttga |
100 |
Q |
| |
|
|||||||| || ||||||| || |||| |||||| |||| |||| || ||||||||||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
39974966 |
agttacattcaaaatcttaagagattatgagtcattccactgatatgttattcaatatctattatatggcattcaatatgttattttaacccacacttga |
39974867 |
T |
|
| Q |
101 |
cacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatat |
200 |
Q |
| |
|
||||||| ||||||||||||||| | || |||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
39974866 |
cacattaccatctctcaattaaatacgatactctttgtgtccgcgatccaccaccacgaagcacttccactccccaaaaatgttgaagcgtatatgatat |
39974767 |
T |
|
| Q |
201 |
caccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
283 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
39974766 |
caccattggaacttacgggggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaggtgagaatgatgtc |
39974683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 282042 - 281813
Alignment:
| Q |
1 |
agttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttga |
100 |
Q |
| |
|
||||||||||| ||||| | ||||||| |||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
282042 |
agttacatccaaaatctcaagacattatgagtcatctcactaatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacacttga |
281943 |
T |
|
| Q |
101 |
cacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatat |
200 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
281942 |
cacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacacagcacttccgctccacaaaaatgttgaagcgtatatgatat |
281843 |
T |
|
| Q |
201 |
caccgttgggacttacgggggagacaacac |
230 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
281842 |
caccattgggacttacgggggagacaacac |
281813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 282
Target Start/End: Complemental strand, 13228783 - 13228533
Alignment:
| Q |
30 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
129 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
13228783 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagtatgag |
13228686 |
T |
|
| Q |
130 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
229 |
Q |
| |
|
||| || ||||||| |||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||| ||| ||||| |||||| ||||| |
|
|
| T |
13228685 |
actttttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaagcggatatgatatcaccattgaaactta-tggggagccaaca |
13228587 |
T |
|
| Q |
230 |
cttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
282 |
Q |
| |
|
||||||||| || | ||||| ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
13228586 |
cttgtgtgaatcaacgcattgcagaaagagcaatcacacaagtgaaaatgatgt |
13228533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 42757638 - 42757706
Alignment:
| Q |
92 |
cacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcac |
164 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
42757638 |
cacaattgacacattaacatctctctattaa----gagactctccgtgtctgtgatccaccaccaagaagcac |
42757706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 281814 - 281775
Alignment:
| Q |
244 |
acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
283 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
281814 |
acattgcagaaaaaacaaccacacaagtgagaatgatgtc |
281775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 50814725 - 50814634
Alignment:
| Q |
192 |
atatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
282 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||| ||||||||| |||| |||||| | ||| | ||| ||||| ||||| |||||||| |
|
|
| T |
50814725 |
atatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgt |
50814634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 21588799 - 21589082
Alignment:
| Q |
1 |
agttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttga |
100 |
Q |
| |
|
|||||||| || ||||||| || |||| |||||||||||| |||| || |||||||||||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
21588799 |
agttacattcaaaatcttaagagattatgagtcatctcactgatatgttattcaatatctattatatgacattcaatgtgttattttaacccacccttga |
21588898 |
T |
|
| Q |
101 |
cacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatat |
200 |
Q |
| |
|
||||||| ||||||||||||||| | || |||||||||||| |||||||||||||||||||||| ||||||||| || |||||||| ||||||||||| |
|
|
| T |
21588899 |
cacattaccatctctcaattaaatacgatactcttcgtgtccacgatccaccaccacgaagcactttcgctccccataattgttgaagcgtatatgatat |
21588998 |
T |
|
| Q |
201 |
caccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
283 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
21588999 |
caccattggaacttacgggggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaggtgagaatgatgtc |
21589082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 69 - 282
Target Start/End: Complemental strand, 13756590 - 13756376
Alignment:
| Q |
69 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
168 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||| ||| ||||| |||||||||||| || ||| ||||||||||||| | ||||||| |
|
|
| T |
13756590 |
gcattcaatgtgttattttaactcacacttgacacattaacatatctatattaagcatgagactctttgtatctactatccaccaccacggaccacttcc |
13756491 |
T |
|
| Q |
169 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
267 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||| | || || |||| ||||||||| |||| |||||| ||||| | ||| ||||| |
|
|
| T |
13756490 |
gctccccaaaaatgttgaagcagatatgatatcaccattgggacttatgtggaagccaacgcttgtgtgaatcgacacattgcagaaagagcaatcacac |
13756391 |
T |
|
| Q |
268 |
aagtgagaatgatgt |
282 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
13756390 |
aagtgataatgatgt |
13756376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 69 - 283
Target Start/End: Original strand, 42797318 - 42797532
Alignment:
| Q |
69 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
168 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||| || ||||| ||||||||||| || |||| |||||||||||| | ||||||| |
|
|
| T |
42797318 |
gcattcaatgtgttattttaactcacacttgacacattaacatctttctattaagcatgagactctctgtatctgctatccaccaccacagaccacttcc |
42797417 |
T |
|
| Q |
169 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
267 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| ||||||| | |||| ||||||||||||| |||| |||||| ||||| | ||| ||||| |
|
|
| T |
42797418 |
gctccccaaaaatgttgaagcagatatgatatcaccattgagacttac-gaggagcaaacacttgtgtgaatcgacacattgcagaaagagcaatcacac |
42797516 |
T |
|
| Q |
268 |
aagtgagaatgatgtc |
283 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
42797517 |
gagtgataatgatgtc |
42797532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 282
Target Start/End: Original strand, 23141828 - 23142042
Alignment:
| Q |
69 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
168 |
Q |
| |
|
||||||||||||||||||||| || | ||||||| |||||||||||| ||||| ||||||||||| || |||| ||||||||||||| | ||||||| |
|
|
| T |
23141828 |
gcattcaatgtgttattttaactcatacttgacacgttaacatctctctattaagcatgagactctctgtatctgctatccaccaccacggaccacttcc |
23141927 |
T |
|
| Q |
169 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
267 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||| |||||| ||||||| |||| ||||||||| |||| |||||| | ||| | ||| ||||| |
|
|
| T |
23141928 |
gctccccgaaaatgttgaagcagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacac |
23142027 |
T |
|
| Q |
268 |
aagtgagaatgatgt |
282 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
23142028 |
gagtgataatgatgt |
23142042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 10901475 - 10901546
Alignment:
| Q |
69 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgt |
140 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||||||||||||||| ||||| | |||||||| ||||| |
|
|
| T |
10901475 |
gcattcaatgtgttattttaactcacatttgatacattaacatctctccattaagtacgagactctccgtgt |
10901546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 36096232 - 36095949
Alignment:
| Q |
1 |
agttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttga |
100 |
Q |
| |
|
|||||||| || ||||||| || |||| |||||||||| | |||| || ||||||||| ||||||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
36096232 |
agttacattcaaaatcttaagagattatgagtcatctcattgatatgttattcaatatcaattatatggcattcaatgtattattttaacccacacttga |
36096133 |
T |
|
| Q |
101 |
cacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatat |
200 |
Q |
| |
|
||||||| |||||||||||||| | || |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36096132 |
cacattacaatctctcaattaaatacgatactcttcgtgtccgcgatccaccaccacgaagcacttccgctccccaaaaatgttgaagcgtatatgatat |
36096033 |
T |
|
| Q |
201 |
caccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
283 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
36096032 |
caccattgggacatacgggggatacaacacttgtgtgattcgacacattgcagaaaaaacaaccacaaaggtgagaatgatgtc |
36095949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 145 - 283
Target Start/End: Original strand, 12746103 - 12746241
Alignment:
| Q |
145 |
gatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga- |
243 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
12746103 |
gatccaccaccacaaagcatttccgctctccaaaaatgttgaagcgtatatgatatcaccattgggaattacaggggagacaacacttgtgtgattcgat |
12746202 |
T |
|
| Q |
244 |
acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
283 |
Q |
| |
|
|||||| || | || ||| ||||||||||||||||||||| |
|
|
| T |
12746203 |
acattgcag-agaagcaatcacacaagtgagaatgatgtc |
12746241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 50331954 - 50332056
Alignment:
| Q |
30 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
129 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
50331954 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctctattaagcatgaa |
50332051 |
T |
|
| Q |
130 |
actct |
134 |
Q |
| |
|
||||| |
|
|
| T |
50332052 |
actct |
50332056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 50332063 - 50332173
Alignment:
| Q |
173 |
cccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcg-aacattgtagaaaaaacaaccacacaagt |
271 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||| ||||||| |||| ||||||||| ||| |||||| ||||| | ||| ||||| ||| |
|
|
| T |
50332063 |
cccaaaaatgttgaagcagatatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgtcacattgcagaaagagcaatcacacgagt |
50332162 |
T |
|
| Q |
272 |
gagaatgatgt |
282 |
Q |
| |
|
|| |||||||| |
|
|
| T |
50332163 |
gataatgatgt |
50332173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 30 - 282
Target Start/End: Original strand, 33240 - 33492
Alignment:
| Q |
30 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
129 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
33240 |
agtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgag |
33337 |
T |
|
| Q |
130 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
229 |
Q |
| |
|
||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||| | |||||||||| | ||| |||||| |||||| ||||| |
|
|
| T |
33338 |
actctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtatgatatcaacattgagactta-tggggagccaaca |
33436 |
T |
|
| Q |
230 |
cttgtgtgatt--cga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
282 |
Q |
| |
|
||||||||| | || |||||| ||||| | ||| |||||||||||||||||||| |
|
|
| T |
33437 |
cttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgatgt |
33492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 30 - 282
Target Start/End: Original strand, 5788867 - 5789119
Alignment:
| Q |
30 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
129 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
5788867 |
agtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgag |
5788964 |
T |
|
| Q |
130 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
229 |
Q |
| |
|
||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||| | |||||||||| | ||| |||||| |||||| ||||| |
|
|
| T |
5788965 |
actctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtatgatatcaacattgagactta-tggggagccaaca |
5789063 |
T |
|
| Q |
230 |
cttgtgtgatt--cga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
282 |
Q |
| |
|
||||||||| | || |||||| ||||| | ||| |||||||||||||||||||| |
|
|
| T |
5789064 |
cttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgatgt |
5789119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 282
Target Start/End: Original strand, 3395448 - 3395698
Alignment:
| Q |
30 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
129 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| |||||||| |||||||||||| |||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
3395448 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaaagtgttattttaactcacacctgacacattaacatctctccattaagtatgag |
3395545 |
T |
|
| Q |
130 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
229 |
Q |
| |
|
|||||| ||||||| |||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
3395546 |
actctttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaagcggatatgatatcaccattggaactta-tggggagacaaca |
3395644 |
T |
|
| Q |
230 |
cttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
282 |
Q |
| |
|
||||||||| |||| || ||| ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
3395645 |
cttgtgtgaatcgacacgttgcagaaagagcaatcacacaagtgaaaatgatgt |
3395698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 41754529 - 41754620
Alignment:
| Q |
192 |
atatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
282 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||| ||||||||| |||| |||||| | ||| | ||| ||||| ||||| |||||||| |
|
|
| T |
41754529 |
atatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgt |
41754620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 1599773 - 1599549
Alignment:
| Q |
30 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
129 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
1599773 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctctattaagcatgag |
1599676 |
T |
|
| Q |
130 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
229 |
Q |
| |
|
||||| || |||| |||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||| ||| | |
|
|
| T |
1599675 |
actctctgtatctgctatccaccaccacataccacttccgctcccaaaaaatgttgaagcatatatgatatcacctttgggacttatgggggagccaata |
1599576 |
T |
|
| Q |
230 |
cttgtgtgattcga-acattgtagaaa |
255 |
Q |
| |
|
||||||||| |||| |||||| ||||| |
|
|
| T |
1599575 |
cttgtgtgaatcgacacattgcagaaa |
1599549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 26894957 - 26894788
Alignment:
| Q |
69 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
168 |
Q |
| |
|
|||| |||||||||||||||| |||| |||| | ||||||||||||| ||||| |||||||| | |||||||| ||||||||||| ||| ||||||| |
|
|
| T |
26894957 |
gcatccaatgtgttattttaaatcacacttgatatattaacatctctccattaagtatgagactatccgtgtctgcaatccaccaccatgaaccacttcc |
26894858 |
T |
|
| Q |
169 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtga |
238 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||| |||||||||| |||| || ||||| |||||||| |
|
|
| T |
26894857 |
actcccctaaaatgttgaagtggatattatatcattattgggacttatggggtagccaacagttgtgtga |
26894788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 33014000 - 33014122
Alignment:
| Q |
162 |
cacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaaca |
260 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
33014000 |
cacttccgctccccaaaaatgttgaagcgtatatgatatcaccattgggacttacatgggagacaacacttgtgtgattcgacacattgcagaaaaaaca |
33014099 |
T |
|
| Q |
261 |
accacacaagtgagaatgatgtc |
283 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33014100 |
accacacaagtgagaatgatgtc |
33014122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 282
Target Start/End: Original strand, 38015928 - 38016177
Alignment:
| Q |
30 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
129 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| || || ||||| |
|
|
| T |
38015928 |
agtcatctcacttatatgttgctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctccatcaagtatgag |
38016025 |
T |
|
| Q |
130 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
229 |
Q |
| |
|
||| || ||||| |||||||||||||||| |||||||| ||| |||||||||||||| | |||||||||| || |||||||||| |||||| || || |
|
|
| T |
38016026 |
actttt-gtgtccacgatccaccaccacgaaccacttccgttccacaaaaatgttgaagcggatatgatatcgccattgggactta-tggggagccagca |
38016123 |
T |
|
| Q |
230 |
cttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
282 |
Q |
| |
|
||||||||| |||| | |||| ||||| | ||| ||||||||| | |||||||| |
|
|
| T |
38016124 |
cttgtgtgaatcgatatattgcagaaagagcaatcacacaagtaataatgatgt |
38016177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 33013881 - 33013989
Alignment:
| Q |
15 |
tcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctc |
114 |
Q |
| |
|
||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
33013881 |
tcttaagacattatgagtcatctcactaatatgttgttcaatatatattatatgaaattcaatgtgttattttaacccacacttgacacattagcatctc |
33013980 |
T |
|
| Q |
115 |
tcaattaaa |
123 |
Q |
| |
|
||||||||| |
|
|
| T |
33013981 |
tcaattaaa |
33013989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 282
Target Start/End: Original strand, 43387132 - 43387344
Alignment:
| Q |
69 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
168 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||||||||||||||||| |||| | |||||||| |||||||| |||||| ||||||||| ||||| |
|
|
| T |
43387132 |
gcattcaatgtgtaattttaactcacacttgacacattaacatctctctgttaagtacgagactctccgtgtctgcgatcca-caccacgaaccactttt |
43387230 |
T |
|
| Q |
169 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
267 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||| |||||||||| ||||| |||||||||||||| | || ||| |||||||||| ||| ||||| |
|
|
| T |
43387231 |
gctcccaaaaaatgttgaaacggatatgatatcaccattgggactta-tggggatccaacacttgtgtgaattgacacaatgtagaaaaagcaatcacac |
43387329 |
T |
|
| Q |
268 |
aagtgagaatgatgt |
282 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
43387330 |
aagtgaaaataatgt |
43387344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 14503 - 14373
Alignment:
| Q |
146 |
atccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-a |
244 |
Q |
| |
|
|||||||| |||||| ||| |||||||| |||||||||||||| | ||||||||||||| || |||||| || |||| |||||||||||||| || | | |
|
|
| T |
14503 |
atccaccatcacgaaccacatccgctcctcaaaaatgttgaagcggatatgatatcaccattaagacttatggaggagccaacacttgtgtgaatcaaca |
14404 |
T |
|
| Q |
245 |
cattgtagaaaaaacaaccacacaagtgaga |
275 |
Q |
| |
|
||||| ||||| ||| ||||||||||||| |
|
|
| T |
14403 |
cattgaagaaagggcaatcacacaagtgaga |
14373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 14595 - 14538
Alignment:
| Q |
30 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaa |
89 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
14595 |
agtcatctcatttatatgttgttcaacatctactatt--gcattcaatgtgttattttaa |
14538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 50251 - 50384
Alignment:
| Q |
69 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
168 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||| ||||| |||||| ||||| | |||||||| |||| | |||||||||| ||||| |||||| |
|
|
| T |
50251 |
gcattcaacgtgttattttaactgacacttgacatattaaattctctccattaagtacgagactctctatgtccgcgatccaccactacgaaccacttct |
50350 |
T |
|
| Q |
169 |
gctccccaaaaatgttgaagtgtatatgatatca |
202 |
Q |
| |
|
|||||| ||||| ||||||| | ||||||||||| |
|
|
| T |
50351 |
gctcccaaaaaacgttgaagcggatatgatatca |
50384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 17510279 - 17510369
Alignment:
| Q |
97 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
187 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || |||||| ||||||||||| |
|
|
| T |
17510279 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccactcccctaaaatgttgaa |
17510369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 17542935 - 17542845
Alignment:
| Q |
97 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
187 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || |||||| ||||||||||| |
|
|
| T |
17542935 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccactcccctaaaatgttgaa |
17542845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 17474795 - 17474885
Alignment:
| Q |
97 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
187 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || | |||| ||||||||||| |
|
|
| T |
17474795 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccacacccctaaaatgttgaa |
17474885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 17578419 - 17578329
Alignment:
| Q |
97 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
187 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || | |||| ||||||||||| |
|
|
| T |
17578419 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccacacccctaaaatgttgaa |
17578329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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