View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10137_low_2 (Length: 626)
Name: NF10137_low_2
Description: NF10137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10137_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 622
Target Start/End: Original strand, 26387992 - 26388582
Alignment:
| Q |
18 |
atgattaaattcttggagctagaggcattaattgtgtgcagcaatacatgttgctgctgccattacattagtttgtgttggtttattgctactggctagt |
117 |
Q |
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| T |
26387992 |
atgattaaattcttggagctagacgcattaattgtgtgcagcaatacatg------ctgccattacattagtttgtgttgctttattgctactg------ |
26388079 |
T |
|
| Q |
118 |
tgttggtttatccatatcagaagatacattcaagtcactaccacccnnnnnnnn--gctactcttcccctctgtccattgaccatgtatcattggagatt |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26388080 |
--ttggtt-atccatatcagaagatacattcaagtcactaccacccttttttttttgctactcttcccctctgtccattgaccatgtatcattggagatt |
26388176 |
T |
|
| Q |
216 |
gattttatacttgtttttggtttgtcctcaacagtgaagattggagacataattggttttttagcatattcttcacatgtcatatgagtttctttttaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26388177 |
gattttatacttgtttttggtttgtcctcaacagtgaagattggagacataattggttttttggcatattcttcacatgtcatatgagtttctttttaga |
26388276 |
T |
|
| Q |
316 |
gtcctctgtacaccataatttggtgacttgtctattagtcgttgttctgccatatctttacatgttgcatttggttgtctccttttattgactagatggn |
415 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26388277 |
gtcctctgtacatcatgatttggtgacttgtctattagtcgttgttctgccatatc-ttacatgttgcatttggttgtctccttttattgactagatggt |
26388375 |
T |
|
| Q |
416 |
nnnnnnnatgtgctattcatcttgagcacaatctgagtattgatgcttcactttatagtcatcaaccatgatcttttgctcannnnnnnnatatgaattg |
515 |
Q |
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| T |
26388376 |
tttttttatgtgctattcatcttgagcacaatctgagtattgatgcttcactttatagtcatcaaccatgatcttttgctcattttttttatatgaattg |
26388475 |
T |
|
| Q |
516 |
ttgagtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcatttttcttctcctt |
615 |
Q |
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| T |
26388476 |
ttgagtcctctgatgtgctaagtatcctgtagcacaacttgagtattgttcatcactttgtagccgtcaagatcttccaacattcatttttcttctcctt |
26388575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 622
Target Start/End: Complemental strand, 1774001 - 1773920
Alignment:
| Q |
543 |
tttagcacaacttgagtattgt-gcatcactttgtagccgtcaagaccttccaacattcat-ttttcttctcctttgcttct |
622 |
Q |
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| T |
1774001 |
tttagcacaacttgagtattgttgcttcattttgtagtcgtcaagaccttctaacattcattttttcttcttcttagcttct |
1773920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 495
Target Start/End: Complemental strand, 1774078 - 1774021
Alignment:
| Q |
438 |
tgagcacaatctgagtattgatgcttcactttatagtcatcaaccatgatcttttgct |
495 |
Q |
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| T |
1774078 |
tgagcacaatctgagtattgatgcttcactcaatagccatcaaccatgctcctttgct |
1774021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 520 - 606
Target Start/End: Complemental strand, 19473318 - 19473232
Alignment:
| Q |
520 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
606 |
Q |
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|||||| |||||||||| || | ||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
19473318 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19473232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 520 - 606
Target Start/End: Complemental strand, 19544243 - 19544157
Alignment:
| Q |
520 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
606 |
Q |
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|||||| |||||||||| || | ||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
19544243 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19544157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 520 - 606
Target Start/End: Original strand, 19588453 - 19588539
Alignment:
| Q |
520 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
606 |
Q |
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| T |
19588453 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19588539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 606
Target Start/End: Complemental strand, 19473371 - 19473325
Alignment:
| Q |
560 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
606 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
19473371 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19473325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 606
Target Start/End: Complemental strand, 19544296 - 19544250
Alignment:
| Q |
560 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
606 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
19544296 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19544250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 606
Target Start/End: Original strand, 19588400 - 19588446
Alignment:
| Q |
560 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
606 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
19588400 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19588446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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