View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10137_low_3 (Length: 505)

Name: NF10137_low_3
Description: NF10137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10137_low_3
NF10137_low_3
[»] chr4 (3 HSPs)
chr4 (18-415)||(33879195-33879592)
chr4 (358-407)||(33878620-33878669)
chr4 (437-491)||(33879128-33879182)
[»] scaffold0386 (2 HSPs)
scaffold0386 (342-491)||(676-825)
scaffold0386 (358-407)||(1284-1333)
[»] chr5 (5 HSPs)
chr5 (342-491)||(13869741-13869890)
chr5 (342-415)||(27641421-27641494)
chr5 (362-407)||(13869240-13869285)
chr5 (362-407)||(27640875-27640920)
chr5 (437-491)||(27641344-27641398)
[»] chr8 (3 HSPs)
chr8 (342-415)||(38460872-38460945)
chr8 (358-400)||(38460427-38460469)
chr8 (437-491)||(38460794-38460848)
[»] chr7 (3 HSPs)
chr7 (342-415)||(29735101-29735174)
chr7 (437-491)||(29735198-29735252)
chr7 (365-407)||(29735715-29735759)
[»] chr3 (3 HSPs)
chr3 (358-415)||(49850835-49850892)
chr3 (358-401)||(49851428-49851471)
chr3 (437-491)||(49850914-49850968)


Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 33879592 - 33879195
Alignment:
Q  18 gtttgtatacaaagtttaaggagtgtggtgcttcgttggaaactttccatcatgacttggagtttgaagtacaagtcaatgctgggagtggaatctgcga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879592 gtttgtatacaaagtttaaggagtgtggtgcttcgttggaaactttccatcatgacttggagtttgaagtacaagtcaatgctgggagtggaatctgcga 33879493  T
Q  118 gaaagcaatggcaatgatcaaacaagctttgggatggaagaacgagagtacctaataactaactgcatgcatgatcgtggttattttttaattattcaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33879492 gaaagcaatggcaatgatcaaacaagctttgggatggaagaaggagagtacctaataactaactgcatgcatgatcatggttattttttaattattcaaa 33879393  T
Q  218 tctcttcttgttttattttcttatggtgaagtttgtttctctcaagtctcttttgaatatgaaatttttctagtttcaatttataatgaaatgtttccgg 317  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||    
T  33879392 tctcttcttgttttattttcatatggtgaagtttgtttctctcaagtctctttcgagtatgaaatttttctagtttcaatttataatgaaatgtttctgg 33879293  T
Q  318 tttcaatttatgactaaagtaaatgagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879292 tttcaatttatgactaaagtaaatgagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 33879195  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 33878620 - 33878669
Alignment:
Q  358 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 407  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33878620 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 33878669  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 491
Target Start/End: Complemental strand, 33879182 - 33879128
Alignment:
Q  437 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 491  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  33879182 tgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtc 33879128  T

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Target: scaffold0386 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 342 - 491
Target Start/End: Original strand, 676 - 825
Alignment:
Q  342 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnntgaaa 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||         ||||        |||||    
T  676 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcattatttttttttatttaaaaaaaatgaaa 775  T
Q  442 atagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 491  Q
    ||||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  776 atagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtc 825  T

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Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 1333 - 1284
Alignment:
Q  358 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 407  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  1333 gaaacgtacataacatgtgacacttacaaacatccaataaaatcatgaca 1284  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 342 - 491
Target Start/End: Complemental strand, 13869890 - 13869741
Alignment:
Q  342 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnntgaaa 441  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||         ||||        |||||    
T  13869890 gagaaatttttacatagaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcattattttttttaatttaaaaaaaatgaaa 13869791  T
Q  442 atagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 491  Q
    ||||||| |||||||| |||||||||||||| | |||||||||| |||||    
T  13869790 atagaaacagaaccatcgtcatccttttgcatcgtggtatagatcatgtc 13869741  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 27641494 - 27641421
Alignment:
Q  342 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 415  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  27641494 gagaaatttttacatagaaacgtacatatcatgtggcacttacaaacattcaatgaaatcatgacatatcatta 27641421  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 13869240 - 13869285
Alignment:
Q  362 cgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 407  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  13869240 cgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 13869285  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 27640875 - 27640920
Alignment:
Q  362 cgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 407  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  27640875 cgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 27640920  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 491
Target Start/End: Complemental strand, 27641398 - 27641344
Alignment:
Q  437 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 491  Q
    |||||||||||| |||||||| |||||||||||||| | |||||||||| |||||    
T  27641398 tgaaaatagaaacagaaccatcgtcatccttttgcatcgtggtatagatcatgtc 27641344  T

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Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 38460945 - 38460872
Alignment:
Q  342 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 415  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38460945 gagaaatttttacatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcatta 38460872  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 38460427 - 38460469
Alignment:
Q  358 gaaacgtacataacatgtggcacttacaaacatccaatgaaat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38460427 gaaacgtacataacatgtggcacttacaaacatccaatgaaat 38460469  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 491
Target Start/End: Complemental strand, 38460848 - 38460794
Alignment:
Q  437 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 491  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  38460848 tgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtc 38460794  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 29735101 - 29735174
Alignment:
Q  342 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 415  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  29735101 gagaaattcttacatagaaacttacataacatgtggcacttacaaacatccaataaaattatgacatatcatta 29735174  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 491
Target Start/End: Original strand, 29735198 - 29735252
Alignment:
Q  437 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 491  Q
    |||||||||||| |||||||| ||||| |||||||| | |||||||||| |||||    
T  29735198 tgaaaatagaaacagaaccatcgtcattcttttgcatcgtggtatagatcatgtc 29735252  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 29735759 - 29735715
Alignment:
Q  365 acataacatgtggcacttacaaac--atccaatgaaatcgtgaca 407  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||    
T  29735759 acataacatgtggcacttacaaacatatccaatgaaatcatgaca 29735715  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 49850835 - 49850892
Alignment:
Q  358 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 415  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  49850835 gaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcatta 49850892  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 49851471 - 49851428
Alignment:
Q  358 gaaacgtacataacatgtggcacttacaaacatccaatgaaatc 401  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  49851471 gaaacatacataacatgtggcacttacaaacatccaatgaaatc 49851428  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 491
Target Start/End: Original strand, 49850914 - 49850968
Alignment:
Q  437 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 491  Q
    |||||||||||| | |||||| |||||||||||||| | |||||||||| |||||    
T  49850914 tgaaaatagaaacataaccatcgtcatccttttgcatcgtggtatagatcatgtc 49850968  T

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