View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10137_low_4 (Length: 490)
Name: NF10137_low_4
Description: NF10137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10137_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Complemental strand, 16695696 - 16695237
Alignment:
| Q |
17 |
tatagtaacaatgctaacaatagctatagtcattccattctatgataaagtcatttctccgatactcaccaaattaaccaaccaagaaggagggttaaca |
116 |
Q |
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| T |
16695696 |
tatagtaacaatgctaacaatagctatagtcattccattctatgataaagtcatttctccaacacttaccaaaatgaccaaccaagacggagggttaaca |
16695597 |
T |
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| Q |
117 |
acccttcaaaggatcggactaggacattttttcgcaattttaacaatggtaattgcagggttagtcgaacaacgaagaagggtttcgtcgacttcattag |
216 |
Q |
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| T |
16695596 |
aaccttcaaaggattggacttggacattttttcgcaattttaacaatggtaattgcagggttagtcgaacaacgaagaagggtttcgtcgacttcattag |
16695497 |
T |
|
| Q |
217 |
gagaatcatatgaaattacacaaatgtcaataatgtggttagtgcctcaatttataactcttggattcaatcaagcattttctattgttggacatactga |
316 |
Q |
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| T |
16695496 |
gagaatcatatgaaattacacaaatgtcaataatgtggttagtgcctcaatttataactcttggattcaatcaagcattttctattgttggacatactga |
16695397 |
T |
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| Q |
317 |
gtttttcaacaaggaatctcctgataaaatgagaagtattggtaattctttgctttcacttcaaacagcagttgcaagtaatttaagcactttcattgtg |
416 |
Q |
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| T |
16695396 |
gtttttcaacaaggaatctcctgataaaatgagaagtattggtaattctttgctttcacttcaaacagcagttgcaagtaatttaagcactttcattgtg |
16695297 |
T |
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| Q |
417 |
aacattattcatagttttagtggaaaacaaggtcaacctgattggttggatagtgatgtc |
476 |
Q |
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| T |
16695296 |
aacattattcatagttttagtggaaaacaaggtgaacctgattggttggatagtgatgtc |
16695237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 25260517 - 25260584
Alignment:
| Q |
303 |
gttggacatactgagtttttcaacaaggaatctcctgataaaatgagaagtattggtaattctttgct |
370 |
Q |
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| T |
25260517 |
gttggacacactgagtttttcaacaaagaatcacctgaaagcatgagaagtataagcaattctttgct |
25260584 |
T |
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