View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10137_low_5 (Length: 428)
Name: NF10137_low_5
Description: NF10137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10137_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 28737690 - 28737385
Alignment:
| Q |
1 |
ccttcaattgaataactgacccgaaagcaacaaaaacataaacccagatgaccaagggacaaccccaaaaatcataaacattaaagcaacaaataagaga |
100 |
Q |
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| T |
28737690 |
ccttcaattgaataactgacccaaaagcaacaaaaacataaacccagatgaccaagggacaacaccaaaaatcataaacattaaagcaacaaataagaga |
28737591 |
T |
|
| Q |
101 |
tgagtgagaacatcgaagattgaggacgacgtcgaagagtgagaacagagacggcgatgaagaaggggaaagggtaaggaacggcgacaagaaattgagg |
200 |
Q |
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| T |
28737590 |
tgagtgagaacagcgaagattgaggacgacgtcgaagagtgagaacagagacggcgatgaagaaggggaaagggtaaggaacggcgacaagaaattgagg |
28737491 |
T |
|
| Q |
201 |
attggaagtgatgcgtttctgcgtttggtttctgcctttggttctgggaagcgcttttgcatttggctttttggttacgatttacataacaaaataatca |
300 |
Q |
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| T |
28737490 |
actggaagtgatgcatttctacgtttggcttctgcctttggttttgggaagcacttttgcatttggctttttggttacgatttacataacaaaataatca |
28737391 |
T |
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| Q |
301 |
attgtc |
306 |
Q |
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|||||| |
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| T |
28737390 |
attgtc |
28737385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 38092573 - 38092643
Alignment:
| Q |
23 |
gaaagcaacaaaaacataaacccagatgaccaagggacaaccccaaaaatcat-aaacattaaagcaacaa |
92 |
Q |
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||||||||||||||||| ||||||||| ||||||| |||||||||||| |||| |||||| |||||||||| |
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| T |
38092573 |
gaaagcaacaaaaacatgaacccagataaccaaggcacaaccccaaaactcatgaaacatgaaagcaacaa |
38092643 |
T |
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