View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10137_low_7 (Length: 386)
Name: NF10137_low_7
Description: NF10137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10137_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 35655574 - 35655956
Alignment:
| Q |
1 |
ctatacttggtaatcttcatcaaattggtgtgtcccctcacagatcactccaagatttagctcacaaatatggccctttaatgcttctttattttgggaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655574 |
ctatacttggtaatcttcatcaaattggtgtgtcccctcacagatcactccaagatttagctcacaaatatggccctttaatgcttctttattttgggaa |
35655673 |
T |
|
| Q |
101 |
ggttccagtacttgtagtttcctcagctgatgcagcaagaaaagtaatgaaaactcatgacttagtcttctgtgataggccacaacttaaaatctttgat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655674 |
ggttccagtacttgtagtttcctcagctgatgcagcaagaaaagtaatgaaaactcatgacttagtcttctgtgataggccacaacttaaaatctttgat |
35655773 |
T |
|
| Q |
201 |
atccttttattcagttccaaagatgtggcaagttgtgcatatggtgagtattggagacaagtaaggagtctcagtgtgttacaccttctaagtaacaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655774 |
atccttttattcagttccaaagatgtggcaagttgtgcatatggtgagtattggagacaagtaaggagtctcagtgtgttacaccttctaagtaacaaaa |
35655873 |
T |
|
| Q |
301 |
gagttcgatcttaccgttgtgttagagaggaagaaactttaagaatgatggaatatattaaggaggtttcttcttctcactcg |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35655874 |
gagttcgatcttaccgttgtgttagagaggaagaaactttaagaatgatggaatatattaaggaggtttcttcttctgactcg |
35655956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 4 - 338
Target Start/End: Original strand, 35641241 - 35641575
Alignment:
| Q |
4 |
tacttggtaatcttcatcaaattggtgtgtcccctcacagatcactccaagatttagctcacaaatatggccctttaatgcttctttattttgggaaggt |
103 |
Q |
| |
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||||||||||||| |||||| || | | | ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||| |
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| T |
35641241 |
tacttggtaatctccatcaagttagcttattccctcacagatcactccaagatttagctcacaagtatggtcctctaatgcttctttatttagggaaggt |
35641340 |
T |
|
| Q |
104 |
tccagtacttgtagtttcctcagctgatgcagcaagaaaagtaatgaaaactcatgacttagtcttctgtgataggccacaacttaaaatctttgatatc |
203 |
Q |
| |
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||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| |
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| T |
35641341 |
accagtggttgtagtttcctcagctgatgcagcaagtcaggtaatgaaaactcatgacttgatcttctctgataggccacaacgtaaaatctttgatatc |
35641440 |
T |
|
| Q |
204 |
cttttattcagttccaaagatgtggcaagttgtgcatatggtgagtattggagacaagtaaggagtctcagtgtgttacaccttctaagtaacaaaagag |
303 |
Q |
| |
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| || | ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| | |
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| T |
35641441 |
atgttgtatggttccaaaggtgtagcaagttgtgcatatggtgagtattggagacaagtaaggagtcttagtgtgttacaccttttgagtaacaaaaggg |
35641540 |
T |
|
| Q |
304 |
ttcgatcttaccgttgtgttagagaggaagaaact |
338 |
Q |
| |
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||| |||||| ||| |||||||||||||||||||| |
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| T |
35641541 |
ttcaatcttatcgtcgtgttagagaggaagaaact |
35641575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 46 - 335
Target Start/End: Original strand, 35676699 - 35676988
Alignment:
| Q |
46 |
cactccaagatttagctcacaaatatggccctttaatgcttctttattttgggaaggttccagtacttgtagtttcctcagctgatgcagcaagaaaagt |
145 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||| ||||||||||||||| |||| |
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| T |
35676699 |
cactccaaaatttagctcacaaatatggccctttaatgcttctttattttggtaaggtaccggtggttgtagtttcctctgctgatgcagcaagagaagt |
35676798 |
T |
|
| Q |
146 |
aatgaaaactcatgacttagtcttctgtgataggccacaacttaaaatctttgatatccttttattcagttccaaagatgtggcaagttgtgcatatggt |
245 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||| |
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| T |
35676799 |
aatgaaaactcatgactcggtcttcgctgataggccacatcgtaaaatctttgatatccttttctacggttccaaagatgtggcaagttgtggatatggt |
35676898 |
T |
|
| Q |
246 |
gagtattggagacaagtaaggagtctcagtgtgttacaccttctaagtaacaaaagagttcgatcttaccgttgtgttagagaggaagaa |
335 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| ||| ||||||| |||||||||||||||| |||||| ||| ||||||||||||||||| |
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| T |
35676899 |
gagtattggaaacaagtaagaagtctcagtgtattaaaccttctgagtaacaaaagagttcaatcttatcgtcgtgttagagaggaagaa |
35676988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 56 - 374
Target Start/End: Original strand, 35646213 - 35646531
Alignment:
| Q |
56 |
tttagctcacaaatatggccctttaatgcttctttattttgggaaggttccagtacttgtagtttcctcagctgatgcagcaagaaaagtaatgaaaact |
155 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| |
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| T |
35646213 |
tttatctcacaaatatggccctttaatgcttctttattttgggaaggttccagtacttgtaatttcctctgctgatacagcaagaaaagtaatgaaaact |
35646312 |
T |
|
| Q |
156 |
catgacttagtcttctgtgataggccacaacttaaaatctttgatatccttttattcagttccaaagatgtggcaagttgtgcatatggtgagtattgga |
255 |
Q |
| |
|
||||| || || |||| |||||| ||| | | |||||| ||| || ||||||| ||||||||||| |||| ||||||| ||||||||| ||||||| |
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| T |
35646313 |
catgatttggttttctctgatagaccatatcgtaaaatgaatgacatacttttatatggttccaaagatatggctagttgtggatatggtgaatattgga |
35646412 |
T |
|
| Q |
256 |
gacaagtaaggagtctcagtgtgttacaccttctaagtaacaaaagagttcgatcttaccgttgtgttagagaggaagaaactttaagaatgatggaata |
355 |
Q |
| |
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| ||| |||||||||| ||| |||||||| | ||||||||| |||||||| |||||| ||| |||| |||||||||||||| ||| |||||||| || | |
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| T |
35646413 |
ggcaattaaggagtctaagtttgttacacatcttaagtaacagaagagttcaatcttatcgtcgtgtgagagaggaagaaacattacgaatgatgaaaca |
35646512 |
T |
|
| Q |
356 |
tattaaggaggtttcttct |
374 |
Q |
| |
|
|||||||||| ||||||| |
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| T |
35646513 |
tattaaggagtgttcttct |
35646531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 46 - 365
Target Start/End: Original strand, 35673244 - 35673563
Alignment:
| Q |
46 |
cactccaagatttagctcacaaatatggccctttaatgcttctttattttgggaaggttccagtacttgtagtttcctcagctgatgcagcaagaaaagt |
145 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
35673244 |
cactctaagattcagctcacaaaaatggccctttagtgcttctttattttgggaaggttccagtacttgt-gttt-----gctgatgcagcaagaaaagt |
35673337 |
T |
|
| Q |
146 |
aat---gaaaactcatgacttagtcttctgtgataggccacaacttaaaatctttgatatccttttat-----tc--agttccaaagatgtggcaagttg |
235 |
Q |
| |
|
||| ||||| |||||||| | |||| |||||| |||||| ||||||| |||||||| | || | || | ||||||| |||| |||||||| |
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|
| T |
35673338 |
aataatgaaaatccatgacttgcttttctctgatagaccacaaaataaaatccttgatatcatattgtatggttccaacttccaaatatgtagcaagttg |
35673437 |
T |
|
| Q |
236 |
tgcatatggtgagtattggagacaagtaaggagtctcagtgtgttacaccttctaagtaacaaaagagttcgatcttaccgttgtgttagagaggaagaa |
335 |
Q |
| |
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|||| |||||||||| ||||||||||||| | || || ||||||||||| | |||||||||||||||||| |||||| ||||| |||| |||||| |
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|
| T |
35673438 |
tgcaaatggtgagtaatggagacaagtaaag-gtgtccgtgtgttacactatgtaagtaacaaaagagttcaatctta---ttgtgcgtgagaagaagaa |
35673533 |
T |
|
| Q |
336 |
actttaagaatgatggaatatattaaggag |
365 |
Q |
| |
|
|||||||||| ||| |||||| |||||||| |
|
|
| T |
35673534 |
actttaagaaggattgaatattttaaggag |
35673563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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