View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10138_high_2 (Length: 345)
Name: NF10138_high_2
Description: NF10138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10138_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 41822245 - 41821946
Alignment:
| Q |
18 |
gatcctatagcatcactggtcgatacggccttcattggccaattaggtatgttatcatgttattagtttgtttgctttgagcttgttacataaatctttc |
117 |
Q |
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| T |
41822245 |
gatcctatagcatcactggtcgatacggccttcattggccaattaggtatgttat--------tagtttgtttgctttgagcttgttacataaatctttc |
41822154 |
T |
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| Q |
118 |
tgcaattaaattatcatccaaaaaagtcgattggacatagcccttcaaattagtagaacaagaactcttttgaagcaccaacacatgcacaagatttgag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41822153 |
tgcaattaaattatcatccaaaaaagtcgattggacatagccgttcaaattagtagaacaagaactcttttgaagcaccaacacatgcacaagatttgag |
41822054 |
T |
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| Q |
218 |
cgactgaagcctgtctcacaagtgaattgacaaaagatagtttcactggaaaatatgaatagaactatagggaaactaaatgttgatacgactcgaaaaa |
317 |
Q |
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| T |
41822053 |
----tgaggcctgtctcacaagtgaattgacaaaagagagtttcactagaaaatatgaatagaactatagggaaactaaatgttgatacgactcgaaaaa |
41821958 |
T |
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