View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10138_high_4 (Length: 301)
Name: NF10138_high_4
Description: NF10138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10138_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 28612434 - 28612700
Alignment:
| Q |
21 |
caggattcttcttaaagaaaggttttaggcagtatgtttccataatctgttcattatggatagctcgatacaagatgatgtttccatgatccgttcatcg |
120 |
Q |
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| T |
28612434 |
caggattcttcttaaagaaaggttttaggcagtatgtttccataatctgttcattatggatagctcgatacaagatgatgtttccatgatccgttcatcg |
28612533 |
T |
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| Q |
121 |
aaaattttatatatgtctgctacacattctacaagtgtaatgccaattttttatgataatgtttatattggtcaatcaagtgagtttcactttgattttg |
220 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28612534 |
aaaattttatatatgactgctacacattctacaagtgtaatgccaatttttgatgataatgtttatattggtcaatcaagtgagtttcactttgattttg |
28612633 |
T |
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| Q |
221 |
ttgaaagatcatagtttgattatactctagtcttttctaggttatcttatagggtgtgtatgtctctgct |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |
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| T |
28612634 |
ttgaaagatcatagtttgattatactctagtcttttctaggctatc---tagggtgtgtatgtttctgct |
28612700 |
T |
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