View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10138_low_1 (Length: 741)
Name: NF10138_low_1
Description: NF10138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10138_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 460 - 726
Target Start/End: Original strand, 20751055 - 20751321
Alignment:
| Q |
460 |
tagagtatcctcaaacaactgcataaactaattttttccaaattattttcaattgttaacaaattacaacnnnnnnnnnnnnnttgaagagactagttta |
559 |
Q |
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| T |
20751055 |
tagagtatcctaaaacaactgcataaactaattttttccaaattattttcaattgttaacaaataacagcaaaaaagtaaaaattgaagagactagttta |
20751154 |
T |
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| Q |
560 |
atatttgaccattcaaatagctactagttgttccatattaataggaaatgtgtattttgaaggtccattgtaaagtctatcaacaaagatacgcatggct |
659 |
Q |
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| T |
20751155 |
atatttgaccattcaaatagctactagttgttccatattaataggaaatgtgtattttgaaggtccattgtaaagtctatcaacaaagatacgcatggct |
20751254 |
T |
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| Q |
660 |
gcctcagtaggatggactggatcccaaaaaatatggtcttgtctattggcacaaaggcttgaaactg |
726 |
Q |
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| T |
20751255 |
gcctcagtaggatggactggatcccaaaaaatatggtcttgtctattggcacaaaggcttgaaactg |
20751321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 20750619 - 20750837
Alignment:
| Q |
9 |
atgagatggacatcacaccatgaacaaattgaagaacactaacatggtttatgcttagacaaaaacaaagggttgatcatcaaacaaacacaaacgcatt |
108 |
Q |
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| T |
20750619 |
atgagatatacaccacaccatgaacaaattgaagaacactaacatggtttatgcttagacaaaaacaaagggttgatcatcaaacaaacacaaaagcatt |
20750718 |
T |
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| Q |
109 |
ttgggagctaccatggcaagaaatgatgatgttggcgttgagtgaccacatgttggtttgatggcggcacaaccttaagagtttatcataccaccacaaa |
208 |
Q |
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| T |
20750719 |
ttgggagctaccatggcaagaaatgatgatgttggcgttgagtgaccccatgttggtttcatggcgacacaaccttaagagtttatcacaccaccacaaa |
20750818 |
T |
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| Q |
209 |
gtcgtggttacatcaataa |
227 |
Q |
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| T |
20750819 |
gtcgtggttacatcaataa |
20750837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 306 - 419
Target Start/End: Original strand, 20750901 - 20751014
Alignment:
| Q |
306 |
gagtatgaattaatttacacgagtatcatactagttagtttacataaaacagatgcataatttcatactcttaaaagatacattctccttctactgggtt |
405 |
Q |
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| T |
20750901 |
gagtatgaattaatttacacgagtatcatactaattagtttacataaaacagatgcataatttcatactcttaaaagatacattctccttctactgggtt |
20751000 |
T |
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| Q |
406 |
gcactacaattgtg |
419 |
Q |
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| T |
20751001 |
gcactacaattgtg |
20751014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 543 - 723
Target Start/End: Original strand, 20755640 - 20755823
Alignment:
| Q |
543 |
ttgaagagactagtttaata---tttgaccattcaaatagctactagttgttccatattaataggaaatgtgtattttgaaggtccattgtaaagtctat |
639 |
Q |
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| T |
20755640 |
ttgaagggactagtttaatactatttaacaattcaaagagctagtagttgttccatattaataggagatgtgtattttgaaggtccattataaagtttat |
20755739 |
T |
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| Q |
640 |
caacaaagatacgcatggctgcctcagtaggatggactggatcccaaaaaatatggtcttgtctattggcacaaaggcttgaaa |
723 |
Q |
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| T |
20755740 |
ccacaaaagtgcgtgtggctgcctcagtaggatgaaattgatcccaaaatatatggtcttgtctattagaacaaatgattgaaa |
20755823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 593 - 714
Target Start/End: Original strand, 20799511 - 20799632
Alignment:
| Q |
593 |
catattaataggaaatgtgtattttgaaggtccattgtaaagtctatcaacaaagatacgcatggctgcctcagtaggatggactggatcccaaaaaata |
692 |
Q |
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| T |
20799511 |
catattaacaggagatgtgtattgtgacggtccattataaagtctatcgacaattatgcgagttactgcctcagtaggatggactgaatcccaaaagata |
20799610 |
T |
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| Q |
693 |
tggtcttgtctattggcacaaa |
714 |
Q |
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| T |
20799611 |
tggtcttgtctattggtacaaa |
20799632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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