View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10138_low_14 (Length: 206)

Name: NF10138_low_14
Description: NF10138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10138_low_14
NF10138_low_14
[»] chr7 (6 HSPs)
chr7 (18-185)||(20073233-20073405)
chr7 (90-175)||(20081676-20081762)
chr7 (25-83)||(20103950-20104008)
chr7 (137-185)||(20083914-20083962)
chr7 (122-182)||(20095815-20095876)
chr7 (83-134)||(20102997-20103048)
[»] chr3 (1 HSPs)
chr3 (82-139)||(26320388-26320445)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 20073405 - 20073233
Alignment:
Q  18 atgaagtaagataagttttaacgtgattgat---actacatttttataattaatgtggaatttggacaattttgtttagttggctagtatgtgtggataa 114  Q
    |||||||||||||||||| || |||||||||   || |||||||||| ||||||||| ||||||||||  |||||||||||||||| || ||||| ||||    
T  20073405 atgaagtaagataagtttaaatgtgattgatgatacaacatttttatgattaatgtgaaatttggacacatttgtttagttggctattacgtgtgtataa 20073306  T
Q  115 gggagtagatgagattaatgtaatc--ccttttatgcttcaaaacctttcatttctattatcggaaactctat 185  Q
    |||||||||||||||||||||||||  | |||| | ||||||| |||||||||||||| ||||||||||||||    
T  20073305 gggagtagatgagattaatgtaatcctcttttttttcttcaaagcctttcatttctatcatcggaaactctat 20073233  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 20081676 - 20081762
Alignment:
Q  90 ttagttggctagtatgtgtggataagggagtagatgagattaatgtaatccctt-ttatgcttcaaaacctttcatttctattatcg 175  Q
    ||||||||||| |||||||| |||||||||| ||||||||||||||||||| || || | ||||||| |||||||||||||||||||    
T  20081676 ttagttggctattatgtgtgtataagggagtggatgagattaatgtaatcctttgtttttcttcaaagcctttcatttctattatcg 20081762  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 20104008 - 20103950
Alignment:
Q  25 aagataagttttaacgtgattgatactacatttttataattaatgtggaatttggacaa 83  Q
    ||||||||||| || |||||||||||| ||||||||||||||||||| |||||||||||    
T  20104008 aagataagtttaaatgtgattgatactgcatttttataattaatgtgaaatttggacaa 20103950  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 20083962 - 20083914
Alignment:
Q  137 atcccttttatgcttcaaaacctttcatttctattatcggaaactctat 185  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  20083962 atccctttttttcttcaaagcctttcatttctattatcggaaactctat 20083914  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 20095876 - 20095815
Alignment:
Q  122 gatgagattaatgtaatcccttt-tatgcttcaaaacctttcatttctattatcggaaactc 182  Q
    ||||||||||||||||||| ||| | | ||||||| ||||| ||||||||||||||||||||    
T  20095876 gatgagattaatgtaatccttttattttcttcaaagcctttgatttctattatcggaaactc 20095815  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 20103048 - 20102997
Alignment:
Q  83 attttgtttagttggctagtatgtgtggataagggagtagatgagattaatg 134  Q
    |||||||||||| | | | |||||||| ||||||||||||||||||||||||    
T  20103048 attttgtttagtagtccattatgtgtgtataagggagtagatgagattaatg 20102997  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 26320388 - 26320445
Alignment:
Q  82 aattttgtttagttggctagtatgtgtggataagggagtagatgagattaatgtaatc 139  Q
    ||||||| |||||||| || ||  |||| ||||| |||||||||||||||||||||||    
T  26320388 aattttgattagttggttattacctgtgtataagagagtagatgagattaatgtaatc 26320445  T

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