View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10138_low_15 (Length: 204)

Name: NF10138_low_15
Description: NF10138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10138_low_15
NF10138_low_15
[»] chr5 (2 HSPs)
chr5 (1-194)||(12541076-12541269)
chr5 (15-194)||(28385739-28385918)
[»] chr2 (3 HSPs)
chr2 (7-186)||(13440597-13440776)
chr2 (4-148)||(13448757-13448901)
chr2 (50-148)||(13455274-13455372)
[»] chr6 (2 HSPs)
chr6 (11-145)||(12589810-12589944)
chr6 (62-134)||(12483116-12483188)
[»] chr7 (1 HSPs)
chr7 (56-194)||(3417125-3417263)
[»] chr4 (5 HSPs)
chr4 (11-148)||(48958548-48958685)
chr4 (11-152)||(48962695-48962836)
chr4 (49-147)||(48911984-48912082)
chr4 (17-92)||(48965736-48965811)
chr4 (63-103)||(48951687-48951727)
[»] chr8 (1 HSPs)
chr8 (49-145)||(12641122-12641218)
[»] scaffold0536 (2 HSPs)
scaffold0536 (49-134)||(6163-6248)
scaffold0536 (26-148)||(1103-1225)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 12541076 - 12541269
Alignment:
Q  1 tcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12541076 tcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctc 12541175  T
Q  101 gtagtgttggacacactcttctccatcaagttcaacaaagttgttgataatgtagcctgtacttttgaacactgtatcaagcatcaatcctatg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12541176 gtagtgttggacacactcttctccatcaagttcaacaaagttgttgataatgtagcctgtacttttgaacactgtgtcaagcatcaatcctatg 12541269  T

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Target: chr5; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 28385739 - 28385918
Alignment:
Q  15 tttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacac 114  Q
    |||||| || |||||||||||||||   ||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28385739 tttcccttctctgctttctcttgaacagttttacgaataaaggaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacac 28385838  T
Q  115 actcttctccatcaagttcaacaaagttgttgataatgtagcctgtacttttgaacactgtatcaagcatcaatcctatg 194  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || |||||||||| |||||||    
T  28385839 actcttctccatcaagttcaacaaagttgttgatgatgtagcctgtacttttgagcaccgtgtcaagcatcattcctatg 28385918  T

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Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 13440597 - 13440776
Alignment:
Q  7 caccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtg 106  Q
    ||||||| ||||||||| ||||||||||||||||| ||||  |||||| |||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  13440597 caccctcctttcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtg 13440696  T
Q  107 ttggacacactcttctccatcaagttcaacaaagttgttgataatgtagcctgtacttttgaacactgtatcaagcatca 186  Q
    |||||  ||||||||||| |||||||||   ||||||||||| |||    || ||||||||| ||||||  |||||||||    
T  13440697 ttggatgcactcttctccgtcaagttcagtgaagttgttgatgatgagtgctttacttttgagcactgtcccaagcatca 13440776  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 13448757 - 13448901
Alignment:
Q  4 cagcaccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgta 103  Q
    |||||||||||||||||||| ||| ||||||||||    ||||  |||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  13448757 cagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctcgta 13448856  T
Q  104 gtgttggacacactcttctccatcaagttcaacaaagttgttgat 148  Q
    |||||| |  |||||||||||||||||||||   |||||||||||    
T  13448857 gtgttgtatgcactcttctccatcaagttcactgaagttgttgat 13448901  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 13455274 - 13455372
Alignment:
Q  50 aataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgat 148  Q
    ||||| |||||||||||||| ||||||| |||||||||| || ||||| |||||||||||||  |||||||||||||||| ||||   |||||||||||    
T  13455274 aataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaattcactgaagttgttgat 13455372  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 12589944 - 12589810
Alignment:
Q  11 ctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttgg 110  Q
    ||||||||||||  |||||||||||||||   |||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |    
T  12589944 ctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttg 12589845  T
Q  111 acacactcttctccatcaagttcaacaaagttgtt 145  Q
    ||||||||||  |||||||||||| | ||||||||    
T  12589844 acacactcttggccatcaagttcagcgaagttgtt 12589810  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 12483188 - 12483116
Alignment:
Q  62 tggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttca 134  Q
    |||||| | ||||||||||||||||||| || |||| |||||||||| ||| || ||||  ||||| ||||||    
T  12483188 tggacctaaatgccaagccttgtgacccatgattttttcgtagtgttcgacgcattctttgccatccagttca 12483116  T

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Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 3417263 - 3417125
Alignment:
Q  56 agaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgataatgtag 155  Q
    ||||| |||||||||||||||||||||||||||   ||||||||| |||||||| | |||||||||||||||||||||||  ||||||||||  ||  ||    
T  3417263 agaagatggaccaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgataaag 3417164  T
Q  156 cctgtacttttgaacactgtatcaagcatcaatcctatg 194  Q
    ||  |||||||||||||||| |||||||||| |||||||    
T  3417163 ccattacttttgaacactgtgtcaagcatcagtcctatg 3417125  T

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Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 48958548 - 48958685
Alignment:
Q  11 ctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttgg 110  Q
    ||||||||||||| ||| ||||||||||||| |||   |||||| |||||  ||||||||||||||| |||||||||||||| |||||| |||||||| |    
T  48958548 ctcatttcccctctctgatttctcttgaatggtttggcgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcg 48958647  T
Q  111 acacactcttctccatcaagttcaacaaagttgttgat 148  Q
    |  |||||||| |||||||||||||  |||||||||||    
T  48958648 atgcactcttcaccatcaagttcaatgaagttgttgat 48958685  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 48962695 - 48962836
Alignment:
Q  11 ctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttgg 110  Q
    ||||| ||||||  ||||||||||||||| |  |||  |||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||| |    
T  48962695 ctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcg 48962794  T
Q  111 acacactcttctccatcaagttcaacaaagttgttgataatg 152  Q
    |  |||||||| || ||||||||| | |||||||||| ||||    
T  48962795 atgcactcttcaccgtcaagttcagcgaagttgttgacaatg 48962836  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 48912082 - 48911984
Alignment:
Q  49 gaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttga 147  Q
    |||||| ||||| |||||||||||||||||| |||||||  || |||||||||||||||| || | ||||||| || ||||||||| |||| |||||||    
T  48912082 gaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttga 48911984  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 48965736 - 48965811
Alignment:
Q  17 tcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtg 92  Q
    ||||||| |||||||||||||||   ||||  |||||| ||||| ||||||||||||||||||||| |||||||||    
T  48965736 tcccctctctgctttctcttgaacagttttacgaataagagaagctggaccaagatgccaagccttatgacccgtg 48965811  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 48951687 - 48951727
Alignment:
Q  63 ggaccaagatgccaagccttgtgacccgtggttttctcgta 103  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  48951687 ggaccaagatgccaagccttgtgaccgatggttttctcgta 48951727  T

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Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 12641218 - 12641122
Alignment:
Q  49 gaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgtt 145  Q
    |||||| | ||||||||||||||||||||||||||| |||| |||||||||| ||||||| ||  || ||||| |||||||||||||||||||||||    
T  12641218 gaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttgtt 12641122  T

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Target: scaffold0536 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 6248 - 6163
Alignment:
Q  49 gaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttca 134  Q
    |||||| |||||  ||||||||||||||||| |||||||| || |||||||||||||||| ||   ||||||| || |||||||||    
T  6248 gaataagagaagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttca 6163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 1225 - 1103
Alignment:
Q  26 tgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctcca 125  Q
    ||||||||||||| || ||||  ||| || ||| | ||| |||||| ||||||||||||||||  ||||| |||| || |  |  |||||||||||||||    
T  1225 tgctttctcttgagtggttttgcgaacaagagatgctgggccaagaagccaagccttgtgaccgatggttctctcataatactcaacacactcttctcca 1126  T
Q  126 tcaagttcaacaaagttgttgat 148  Q
    || || || |||||| |||||||    
T  1125 tcgagctctacaaagctgttgat 1103  T

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