View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10138_low_2 (Length: 495)
Name: NF10138_low_2
Description: NF10138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10138_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 12 - 495
Target Start/End: Original strand, 41821225 - 41821708
Alignment:
| Q |
12 |
agcataggagaatcctgtacaaatgatccatattacttttaaatcatcgtgtggtgatacgaggtcaaatcattaaagatataggttaaaataaagactg |
111 |
Q |
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| T |
41821225 |
agcataggagaatcctgtacaaatgatccatattacttttaaatcatcgtgtggtgatacgaggtcaaatcattaaagatataggttaaaataaagactg |
41821324 |
T |
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| Q |
112 |
aagtgatattagcctataagcaagtctcgtaatgtttatacaaaagtacttacagaagtcactcccatgaagttcaataaaggttttgctgcagaaataa |
211 |
Q |
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| T |
41821325 |
aagtgatattagcctataagcaagtctcgtaatgtttatacaaaagtacttacagaagtcactcccatgaagttcaataaaggttttgctgcagaaataa |
41821424 |
T |
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| Q |
212 |
gtattgttgcctggacgaggccaaggacacctccaaaatataaagctgacgaagctgaaggaatttgccttctcttatgttgatcatccttaactacatt |
311 |
Q |
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| T |
41821425 |
gtattgttgcctggacgaggccaaggacacctccaaaatataacgctgacgaagctgaaggaatttgccttctcttatgttgatcatccttaactacatt |
41821524 |
T |
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| Q |
312 |
aaagctttcaacaaccgaatctgagttgtcaacacattcatatgttagtaatcaggattttttcttggttttcctgttgagaaacaaggctcggcagact |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41821525 |
aaagctttcaacaaccgaatctgagttgtcaacacattcatatgttagtaatcaggattttttcttggttttcctgttgagaaacaaggcttggcagact |
41821624 |
T |
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| Q |
412 |
atcaggaaagtagaagaatcgtacttttctgcggtaagaactctttggtttctgcatccggaggtgtcgcagcttccaagcatc |
495 |
Q |
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| T |
41821625 |
atcaggaaagtagaagaatcgtacttttctgcggtaagaactctttggtttcagcatccggaggtgtcgcagcttccaagcatc |
41821708 |
T |
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