View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10138_low_4 (Length: 332)

Name: NF10138_low_4
Description: NF10138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10138_low_4
NF10138_low_4
[»] chr8 (3 HSPs)
chr8 (29-320)||(6374109-6374400)
chr8 (29-63)||(8382398-8382432)
chr8 (87-116)||(6412915-6412944)
[»] chr4 (7 HSPs)
chr4 (239-284)||(51703081-51703126)
chr4 (28-62)||(37624752-37624786)
chr4 (29-62)||(38510172-38510205)
chr4 (29-62)||(50203032-50203065)
chr4 (29-62)||(54042098-54042131)
chr4 (30-62)||(45043759-45043791)
chr4 (30-62)||(53814413-53814445)
[»] chr2 (4 HSPs)
chr2 (239-284)||(32394592-32394637)
chr2 (29-63)||(45081817-45081851)
chr2 (29-62)||(32228176-32228209)
chr2 (29-62)||(40987421-40987454)
[»] chr3 (5 HSPs)
chr3 (237-284)||(53466872-53466919)
chr3 (29-62)||(38140906-38140939)
chr3 (156-186)||(40049096-40049126)
chr3 (29-62)||(30186328-30186361)
chr3 (29-62)||(51397964-51397997)
[»] chr1 (6 HSPs)
chr1 (28-64)||(26352000-26352036)
chr1 (28-62)||(30293532-30293566)
chr1 (29-63)||(34047400-34047434)
chr1 (29-63)||(52125045-52125079)
chr1 (29-62)||(2610993-2611026)
chr1 (29-62)||(50094181-50094214)
[»] chr7 (3 HSPs)
chr7 (26-61)||(23935376-23935411)
chr7 (29-63)||(5723194-5723228)
chr7 (29-62)||(22297952-22297985)
[»] chr5 (3 HSPs)
chr5 (29-68)||(7580034-7580073)
chr5 (28-62)||(31557252-31557286)
chr5 (28-68)||(15400379-15400419)
[»] chr6 (2 HSPs)
chr6 (29-62)||(32429240-32429273)
chr6 (29-62)||(34519291-34519324)
[»] scaffold0015 (1 HSPs)
scaffold0015 (30-62)||(21248-21280)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 320
Target Start/End: Complemental strand, 6374400 - 6374109
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagtaagaaaagaaggtacaccttctctttaagttttatctttcttcttcttcattgatcgcatatgattg 128  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6374400 ctaaaacgacactcgctttaaaacggattgagtaaaaaaagaaggtacaccttctctttaagttttatctttcttcttcttcattgatcgcatatgattg 6374301  T
Q  129 gttatatgtcaattttttgcctgaaatttttaatttattactccctccgttttaaaatgactggacttacttttatttgggatttaaagtaacaattaat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6374300 gttatatgtcaattttttgcctgaaatttttaatttattactccctccgttttaaaatgattggacttacttttatttgggatttaaagtaacaattaat 6374201  T
Q  229 tatattattagtttttcatgaaattagacccaaaagctctaataacagtcatcaatagatgcaactcacagatcggataaatgttctatatg 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6374200 tatattattagtttttcatgaaattagacccaaaagctctaataacagtcatcaatagatgcgactcacagatcggataaatgttctatatg 6374109  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 8382432 - 8382398
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagtaa 63  Q
    |||||||||||||| ||||||||||||||||||||    
T  8382432 ctaaaacgacactcattttaaaacggatggagtaa 8382398  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 6412944 - 6412915
Alignment:
Q  87 taagttttatctttcttcttcttcattgat 116  Q
    ||||||||||||||||||||||||||||||    
T  6412944 taagttttatctttcttcttcttcattgat 6412915  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 51703081 - 51703126
Alignment:
Q  239 gtttttcatgaaattagacccaaaagctctaataacagtcatcaat 284  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||    
T  51703081 gtttttcatgaaattagaccaaaaagctcaaataacagtcatcaat 51703126  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 37624752 - 37624786
Alignment:
Q  28 cctaaaacgacactcgttttaaaacggatggagta 62  Q
    ||||||||||||||| |||||||||||||||||||    
T  37624752 cctaaaacgacactcattttaaaacggatggagta 37624786  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 38510205 - 38510172
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  38510205 ctaaaacgacactcattttaaaacggatggagta 38510172  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 50203065 - 50203032
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  50203065 ctaaaacgacactcattttaaaacggatggagta 50203032  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 54042131 - 54042098
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  54042131 ctaaaacgacactcattttaaaacggatggagta 54042098  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 45043759 - 45043791
Alignment:
Q  30 taaaacgacactcgttttaaaacggatggagta 62  Q
    ||||||||||||| |||||||||||||||||||    
T  45043759 taaaacgacactcattttaaaacggatggagta 45043791  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 53814445 - 53814413
Alignment:
Q  30 taaaacgacactcgttttaaaacggatggagta 62  Q
    ||||||||||||| |||||||||||||||||||    
T  53814445 taaaacgacactcattttaaaacggatggagta 53814413  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 32394637 - 32394592
Alignment:
Q  239 gtttttcatgaaattagacccaaaagctctaataacagtcatcaat 284  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||    
T  32394637 gtttttcatgaaattagaccaaaaagctcaaataacagtcatcaat 32394592  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 45081851 - 45081817
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagtaa 63  Q
    |||||||||||||| ||||||||||||||||||||    
T  45081851 ctaaaacgacactcattttaaaacggatggagtaa 45081817  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 32228176 - 32228209
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  32228176 ctaaaacgacactcattttaaaacggatggagta 32228209  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 40987421 - 40987454
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  40987421 ctaaaacgacactcattttaaaacggatggagta 40987454  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 53466919 - 53466872
Alignment:
Q  237 tagtttttcatgaaattagacccaaaagctctaataacagtcatcaat 284  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||||||    
T  53466919 tagtttatcatgaaattagaccaaaaagctcaaataacagtcatcaat 53466872  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 38140939 - 38140906
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    ||||||||||||||||||||||||||||||||||    
T  38140939 ctaaaacgacactcgttttaaaacggatggagta 38140906  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 186
Target Start/End: Complemental strand, 40049126 - 40049096
Alignment:
Q  156 ttttaatttattactccctccgttttaaaat 186  Q
    |||||||||||||||||||||||||||||||    
T  40049126 ttttaatttattactccctccgttttaaaat 40049096  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 30186361 - 30186328
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  30186361 ctaaaacgacactcattttaaaacggatggagta 30186328  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 51397997 - 51397964
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  51397997 ctaaaacgacactcattttaaaacggatggagta 51397964  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 26352036 - 26352000
Alignment:
Q  28 cctaaaacgacactcgttttaaaacggatggagtaag 64  Q
    ||||||||||||||| |||||||||||||||||||||    
T  26352036 cctaaaacgacactcattttaaaacggatggagtaag 26352000  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 30293532 - 30293566
Alignment:
Q  28 cctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||||||||| ||||||||||||||    
T  30293532 cctaaaacgacactcgttttgaaacggatggagta 30293566  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 34047400 - 34047434
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagtaa 63  Q
    |||||||||||||| ||||||||||||||||||||    
T  34047400 ctaaaacgacactcattttaaaacggatggagtaa 34047434  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 52125079 - 52125045
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagtaa 63  Q
    |||||||||||||| ||||||||||||||||||||    
T  52125079 ctaaaacgacactcattttaaaacggatggagtaa 52125045  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 2610993 - 2611026
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  2610993 ctaaaacgacactcattttaaaacggatggagta 2611026  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 50094214 - 50094181
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  50094214 ctaaaacgacactcattttaaaacggatggagta 50094181  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 23935411 - 23935376
Alignment:
Q  26 ttcctaaaacgacactcgttttaaaacggatggagt 61  Q
    ||||||||||||||||| ||||||||||||||||||    
T  23935411 ttcctaaaacgacactcattttaaaacggatggagt 23935376  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 5723194 - 5723228
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagtaa 63  Q
    |||||||||||||| ||||||||||||||||||||    
T  5723194 ctaaaacgacactcattttaaaacggatggagtaa 5723228  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 22297985 - 22297952
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  22297985 ctaaaacgacactcattttaaaacggatggagta 22297952  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 7580034 - 7580073
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagtaagaaaa 68  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  7580034 ctaaaacgacactcgttttaaaacgaatgaagtaagaaaa 7580073  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 31557286 - 31557252
Alignment:
Q  28 cctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  31557286 cctaaaacgacactcgttttaaaacggagggagta 31557252  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 15400379 - 15400419
Alignment:
Q  28 cctaaaacgacactcgttttaaaacggatggagtaagaaaa 68  Q
    ||||||||||||||| |||||||||||| ||||||| ||||    
T  15400379 cctaaaacgacactcattttaaaacggagggagtaataaaa 15400419  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 32429273 - 32429240
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  32429273 ctaaaacgacactcattttaaaacggatggagta 32429240  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 34519291 - 34519324
Alignment:
Q  29 ctaaaacgacactcgttttaaaacggatggagta 62  Q
    |||||||||||||| |||||||||||||||||||    
T  34519291 ctaaaacgacactcattttaaaacggatggagta 34519324  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 21248 - 21280
Alignment:
Q  30 taaaacgacactcgttttaaaacggatggagta 62  Q
    ||||||||||||| |||||||||||||||||||    
T  21248 taaaacgacactcattttaaaacggatggagta 21280  T

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