View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10138_low_8 (Length: 279)
Name: NF10138_low_8
Description: NF10138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10138_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 41246855 - 41247108
Alignment:
| Q |
13 |
ctagcaatgtctggaacagccagcgctgctgctggtaaagaaagcgctccattcacaatcacatcagccaccaaagctcggaattttgtgtgaagagttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41246855 |
ctagcaatgtctggaacagccagcgctgctgctggtaaagaaagcgctccattcacaatcacgtcagccaccgaagctcggaattttgtgtgaagagttg |
41246954 |
T |
|
| Q |
113 |
gcgagatgttcaacgagtccaccaaacgaataccgagccaattgtctgtccaaagattaatgtttgtacctgtcccaacaatccaaatcaagttcgaaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
41246955 |
gcgagatgttcaacgagtccaccaaacgaataccgagccaattgtctgtccaaagattaatgtttgcacctgtcccaacaatccaaatcgagttcgaaga |
41247054 |
T |
|
| Q |
213 |
aatagtagacaagtgttccttaatactgccccacaccgaagatagaaaatagtg |
266 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
41247055 |
aatagtagacaagtgttccttaataccgccccacatcgaagatagaaaatagtg |
41247108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 10707461 - 10707701
Alignment:
| Q |
26 |
gaacagccagcgctgctgctggtaaagaaagcgctccattcacaatcacatcagccaccaaagctcggaattttgtgtgaagagttggcgagatgttcaa |
125 |
Q |
| |
|
||||||||| ||| ||||||||||||| || |||| || ||||||||||||||| ||||||| |||||||||||||||||||||||||| | | |
|
|
| T |
10707461 |
gaacagccattgcttctgctggtaaagagtatgcgccatccataatcacatcagccactgaagctcgtaattttgtgtgaagagttggcgagatataaag |
10707560 |
T |
|
| Q |
126 |
cgagtccaccaaacgaataccgagccaattgtctgtccaaagattaatgtttgtacctgtcccaacaatccaaatcaagttcgaagaaatagtagacaag |
225 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| |||||| | ||||||||||| ||||||||||||||||||||| |||| ||||||| ||||| |||| |
|
|
| T |
10707561 |
caagtccaccaaacgaatatcgagccaattgtttgtccataaattaatgtttgcacctgtcccaacaatccaaattgagtttgaagaaacagtagccaag |
10707660 |
T |
|
| Q |
226 |
tgttccttaatactgccccacaccgaagatagaaaatagtg |
266 |
Q |
| |
|
||||| ||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
10707661 |
tgttctttaataccgccccacaccaaagattgaaaatagtg |
10707701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 10921231 - 10921471
Alignment:
| Q |
26 |
gaacagccagcgctgctgctggtaaagaaagcgctccattcacaatcacatcagccaccaaagctcggaattttgtgtgaagagttggcgagatgttcaa |
125 |
Q |
| |
|
||||||||| ||| ||||||||||||| || |||| || ||||||||||||||| ||||||| |||||||||||||||||||||||||| | | |
|
|
| T |
10921231 |
gaacagccattgcttctgctggtaaagagtatgcgccatccataatcacatcagccactgaagctcgtaattttgtgtgaagagttggcgagatataaag |
10921330 |
T |
|
| Q |
126 |
cgagtccaccaaacgaataccgagccaattgtctgtccaaagattaatgtttgtacctgtcccaacaatccaaatcaagttcgaagaaatagtagacaag |
225 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| |||||| | ||||||||||| ||||||||||||||||||||| |||| ||||||| ||||| |||| |
|
|
| T |
10921331 |
caagtccaccaaacgaatatcgagccaattgtttgtccataaattaatgtttgcacctgtcccaacaatccaaattgagtttgaagaaacagtagccaag |
10921430 |
T |
|
| Q |
226 |
tgttccttaatactgccccacaccgaagatagaaaatagtg |
266 |
Q |
| |
|
||||| ||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
10921431 |
tgttctttaataccgccccacaccaaagattgaaaatagtg |
10921471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University