View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10139_high_1 (Length: 539)

Name: NF10139_high_1
Description: NF10139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10139_high_1
NF10139_high_1
[»] chr6 (31 HSPs)
chr6 (1-414)||(23804983-23805417)
chr6 (1-414)||(22982991-22983425)
chr6 (1-231)||(22883390-22883641)
chr6 (1-231)||(22901320-22901571)
chr6 (1-170)||(22916259-22916433)
chr6 (336-414)||(22963057-22963135)
chr6 (336-414)||(23825258-23825336)
chr6 (437-512)||(20004868-20004943)
chr6 (444-514)||(24469125-24469195)
chr6 (440-520)||(21846368-21846448)
chr6 (449-520)||(14078434-14078505)
chr6 (449-513)||(14077920-14077984)
chr6 (440-520)||(19578194-19578274)
chr6 (440-520)||(19594635-19594715)
chr6 (449-520)||(8066044-8066115)
chr6 (449-520)||(14638634-14638705)
chr6 (437-520)||(17383062-17383144)
chr6 (453-520)||(21153135-21153202)
chr6 (444-514)||(24479372-24479442)
chr6 (440-520)||(9519093-9519174)
chr6 (460-520)||(1636036-1636096)
chr6 (449-509)||(17822709-17822769)
chr6 (449-520)||(22409240-22409311)
chr6 (440-514)||(23007186-23007260)
chr6 (440-514)||(23781104-23781178)
chr6 (451-520)||(14723009-14723078)
chr6 (441-489)||(11193035-11193083)
chr6 (441-489)||(13021713-13021761)
chr6 (460-520)||(27123517-27123577)
chr6 (449-512)||(22849458-22849521)
chr6 (449-514)||(14075810-14075875)
[»] chr2 (15 HSPs)
chr2 (437-520)||(29143978-29144061)
chr2 (440-520)||(17629359-17629439)
chr2 (440-520)||(17674651-17674731)
chr2 (450-514)||(25921908-25921972)
chr2 (449-520)||(24089875-24089946)
chr2 (449-520)||(25531580-25531651)
chr2 (449-520)||(27908125-27908196)
chr2 (451-512)||(25536934-25536995)
chr2 (460-520)||(25886862-25886922)
chr2 (449-520)||(15340321-15340392)
chr2 (449-520)||(28929716-28929787)
chr2 (443-521)||(22378481-22378559)
chr2 (437-519)||(27540846-27540928)
chr2 (449-521)||(18121216-18121288)
chr2 (449-520)||(31803756-31803827)
[»] chr8 (22 HSPs)
chr8 (440-512)||(17510272-17510344)
chr8 (437-520)||(25233375-25233458)
chr8 (440-520)||(20399145-20399225)
chr8 (440-520)||(23868482-23868562)
chr8 (441-520)||(13313943-13314022)
chr8 (449-520)||(18569924-18569995)
chr8 (449-520)||(24583808-24583879)
chr8 (442-520)||(24722618-24722696)
chr8 (452-520)||(17100944-17101012)
chr8 (449-505)||(25227154-25227210)
chr8 (440-520)||(26830127-26830207)
chr8 (449-520)||(19265135-19265206)
chr8 (449-520)||(21315698-21315769)
chr8 (449-520)||(24389078-24389149)
chr8 (459-520)||(17997587-17997648)
chr8 (451-520)||(24112405-24112474)
chr8 (449-514)||(26887869-26887933)
chr8 (452-520)||(29381318-29381386)
chr8 (449-520)||(29766066-29766137)
chr8 (451-520)||(18447565-18447634)
chr8 (449-520)||(24109689-24109760)
chr8 (451-508)||(23890299-23890356)
[»] chr7 (26 HSPs)
chr7 (440-520)||(11804093-11804173)
chr7 (440-520)||(13278530-13278610)
chr7 (440-520)||(4450031-4450110)
chr7 (440-520)||(13263699-13263779)
chr7 (440-520)||(13756089-13756169)
chr7 (440-520)||(39272113-39272193)
chr7 (449-520)||(8977960-8978031)
chr7 (449-520)||(9134164-9134235)
chr7 (458-520)||(3586183-3586244)
chr7 (442-520)||(10611095-10611173)
chr7 (440-520)||(1861989-1862069)
chr7 (440-520)||(18362657-18362737)
chr7 (449-520)||(12330428-12330499)
chr7 (449-520)||(23297723-23297794)
chr7 (449-520)||(6043506-6043576)
chr7 (449-520)||(16057872-16057943)
chr7 (452-514)||(2565517-2565579)
chr7 (440-514)||(8318132-8318205)
chr7 (449-520)||(25692147-25692222)
chr7 (440-520)||(8878370-8878450)
chr7 (468-520)||(11505648-11505700)
chr7 (449-520)||(4820259-4820329)
chr7 (475-514)||(17078136-17078175)
chr7 (470-520)||(11505528-11505578)
chr7 (470-520)||(11505588-11505638)
chr7 (468-520)||(8053088-8053140)
[»] chr5 (12 HSPs)
chr5 (440-520)||(28665836-28665916)
chr5 (444-520)||(23388194-23388270)
chr5 (440-520)||(16522517-16522597)
chr5 (440-512)||(34131439-34131511)
chr5 (458-520)||(15199439-15199502)
chr5 (461-520)||(20859723-20859782)
chr5 (449-520)||(19007509-19007580)
chr5 (449-520)||(25401409-25401480)
chr5 (452-514)||(19052430-19052492)
chr5 (451-520)||(20314449-20314518)
chr5 (449-508)||(17433242-17433301)
chr5 (446-520)||(24321204-24321279)
[»] chr4 (18 HSPs)
chr4 (440-520)||(17710699-17710779)
chr4 (449-520)||(7583371-7583442)
chr4 (442-520)||(11252774-11252852)
chr4 (451-520)||(22171132-22171201)
chr4 (449-520)||(10105656-10105727)
chr4 (449-514)||(11781920-11781985)
chr4 (449-520)||(8968708-8968779)
chr4 (449-512)||(17108052-17108115)
chr4 (449-512)||(17336005-17336068)
chr4 (451-520)||(16730646-16730715)
chr4 (447-520)||(17217935-17218008)
chr4 (449-520)||(12577953-12578024)
chr4 (440-514)||(15165836-15165910)
chr4 (440-500)||(17025310-17025370)
chr4 (437-489)||(37741015-37741067)
chr4 (449-514)||(19604472-19604537)
chr4 (449-520)||(14572819-14572891)
chr4 (441-485)||(25095743-25095787)
[»] scaffold0034 (1 HSPs)
scaffold0034 (437-520)||(81092-81175)
[»] chr1 (23 HSPs)
chr1 (440-514)||(15542964-15543038)
chr1 (444-520)||(21450144-21450220)
chr1 (441-520)||(21333711-21333790)
chr1 (449-520)||(24055048-24055119)
chr1 (440-514)||(20147556-20147630)
chr1 (444-520)||(18528193-18528269)
chr1 (440-520)||(25403034-25403114)
chr1 (440-520)||(26611999-26612079)
chr1 (449-520)||(9402662-9402733)
chr1 (449-520)||(20107207-20107278)
chr1 (451-520)||(15159474-15159543)
chr1 (449-514)||(31234927-31234992)
chr1 (440-520)||(18831545-18831624)
chr1 (449-520)||(18735207-18735278)
chr1 (440-514)||(728543-728617)
chr1 (449-514)||(17609866-17609930)
chr1 (449-513)||(12209652-12209716)
chr1 (440-520)||(18826727-18826807)
chr1 (449-520)||(21983688-21983759)
chr1 (462-512)||(22623975-22624025)
chr1 (449-520)||(27545755-27545827)
chr1 (449-512)||(27972930-27972993)
chr1 (449-520)||(26021780-26021852)
[»] scaffold0056 (2 HSPs)
scaffold0056 (440-520)||(53852-53932)
scaffold0056 (437-520)||(22342-22425)
[»] chr3 (22 HSPs)
chr3 (449-520)||(19909661-19909732)
chr3 (449-520)||(2166634-2166705)
chr3 (449-520)||(19575190-19575261)
chr3 (441-520)||(20121939-20122018)
chr3 (449-520)||(41509539-41509610)
chr3 (451-520)||(19169451-19169519)
chr3 (440-520)||(14977137-14977217)
chr3 (440-514)||(16228971-16229045)
chr3 (451-520)||(16244679-16244748)
chr3 (449-514)||(19170793-19170858)
chr3 (440-520)||(8171068-8171148)
chr3 (449-520)||(8882085-8882154)
chr3 (449-520)||(12372938-12373009)
chr3 (449-520)||(18457824-18457894)
chr3 (437-514)||(19910477-19910551)
chr3 (440-489)||(11636532-11636581)
chr3 (451-520)||(20022542-20022611)
chr3 (449-514)||(25851653-25851717)
chr3 (452-512)||(9780877-9780937)
chr3 (449-520)||(31284955-31285027)
chr3 (449-520)||(20430812-20430883)
chr3 (440-520)||(19533166-19533246)
[»] scaffold0016 (1 HSPs)
scaffold0016 (444-520)||(4198-4274)
[»] scaffold0263 (1 HSPs)
scaffold0263 (445-520)||(16624-16699)
[»] scaffold0032 (1 HSPs)
scaffold0032 (437-520)||(102333-102416)
[»] scaffold0451 (1 HSPs)
scaffold0451 (449-520)||(5091-5162)
[»] scaffold0054 (1 HSPs)
scaffold0054 (451-520)||(73032-73101)
[»] scaffold1156 (1 HSPs)
scaffold1156 (464-520)||(620-676)
[»] scaffold0111 (1 HSPs)
scaffold0111 (449-509)||(11836-11896)
[»] scaffold0671 (1 HSPs)
scaffold0671 (452-520)||(2763-2830)
[»] scaffold0005 (1 HSPs)
scaffold0005 (449-520)||(244485-244557)


Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 23804983 - 23805417
Alignment:
Q  1 ggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactcattctcaacttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23804983 ggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactcattctcaacttgaa 23805082  T
Q  101 cagtttgcgccaaatactattgatg-aagcatgatccatgtcagagactaatcttgtaggtaacattacc--------------------aagtcaataa 179  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||                    ||||||||||    
T  23805083 cagtttgcgccaaatactattgatgaaagcatgatccatgtcagagactaatcttccaggtaacattaccatgatggagaaataaaggtgaagtcaataa 23805182  T
Q  180 aaagatcttcccatatggaataattaactagcaaagtgattgatatctggc-agtgtaccaaaattcgtcaagcaatnnnnnnngtttgtattcacagtt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||       ||||||||||||||||    
T  23805183 aaagatcttcccatatggaataattaactagcaaagtgattgatatctggcaagtgtaccaaaatttgtcaagcaat-aaaaaagtttgtattcacagtt 23805281  T
Q  279 atgcgattaattagaaaacttaacaattacatatgttagtgattaggactttggatttttgcatcaacttgggatttatgaaattaaaataaattgaatt 378  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23805282 atgcgattaatcagaaaacttaacaattatatatgttagtgattaggactttggatttttgcataaacttgggatttatgaaattaaaataaattgaatt 23805381  T
Q  379 aaacaaagatggtaaaaagtgattaggactttcgaa 414  Q
    |||||| |||||||||||||||||||||||||||||    
T  23805382 aaacaaggatggtaaaaagtgattaggactttcgaa 23805417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 22983425 - 22982991
Alignment:
Q  1 ggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactcattctcaacttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22983425 ggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactcattctcaacttgaa 22983326  T
Q  101 cagtttgcgccaaatactattgatg-aagcatgatccatgtcagagactaatcttgtaggtaacattacc--------------------aagtcaataa 179  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||                    ||||||||||    
T  22983325 cagtttgcgccaaataatattgatgaaagcatgatccatgtcagagactaatcttccaggtaacattaccatgatggagaaataaaggtgaagtcaataa 22983226  T
Q  180 aaagatcttcccatatggaataattaactagcaaagtgattgatatctggc-agtgtaccaaaattcgtcaagcaatnnnnnnngtttgtattcacagtt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||       ||||||||||||||||    
T  22983225 aaagatcttcccatatggaataattaactagcaaagtgattgatatctggcaagtgtaccaaaatttgtcaagcaat-aaaaaagtttgtattcacagtt 22983127  T
Q  279 atgcgattaattagaaaacttaacaattacatatgttagtgattaggactttggatttttgcatcaacttgggatttatgaaattaaaataaattgaatt 378  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22983126 atgcgattaatcagaaaacttaacaattatatatgttagtgattaggactttggatttttgcataaacttgggatttatgaaattaaaataaattgaatt 22983027  T
Q  379 aaacaaagatggtaaaaagtgattaggactttcgaa 414  Q
    |||||| |||||||||||||||||||||||||||||    
T  22983026 aaacaaggatggtaaaaagtgattaggactttcgaa 22982991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 22883390 - 22883641
Alignment:
Q  1 ggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactcattctcaacttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22883390 ggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactcattctcaacttgaa 22883489  T
Q  101 cagtttgcgccaaatactattgatg-aagcatgatccatgtcagagactaatcttgtaggtaacattacc--------------------aagtcaataa 179  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||                    |||||||||     
T  22883490 cagtttgcgccaaatattattgatgaaagcatgatccatgtcagagactagtcttctaggtaacattaccatgaggaaggaataaaggtgaagtcaatag 22883589  T
Q  180 aaagatcttcccatatggaataattaactagcaaagtgattgatatctggca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22883590 aaagatcttcccatatggaataattaactagcaaagtgattgatatttggca 22883641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 22901320 - 22901571
Alignment:
Q  1 ggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactcattctcaacttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22901320 ggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactcattctcaacttgaa 22901419  T
Q  101 cagtttgcgccaaatactattgatg-aagcatgatccatgtcagagactaatcttgtaggtaacattacc--------------------aagtcaataa 179  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||                    |||||||||     
T  22901420 cagtttgcgccaaatattattgatgaaagcatgatccatgtcagagactagtcttctaggtaacattaccatgaggaaggaataaaggtgaagtcaatag 22901519  T
Q  180 aaagatcttcccatatggaataattaactagcaaagtgattgatatctggca 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  22901520 aaagatcttcccatatggaataattaactagcaaattgattgatatttggca 22901571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 22916259 - 22916433
Alignment:
Q  1 ggtggtgaacaaattctaggtattgcactaaa----gaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactcattctcaact 96  Q
    |||||||||||||||||||||||||||||| |    |||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  22916259 ggtggtgaacaaattctaggtattgcactatatatagaaagattcaagacttcattttatccatctattttaggatggtagaaagtgctcattctcaact 22916358  T
Q  97 tgaacagtttgcgccaaatactattgatg-aagcatgatccatgtcagagactaatcttgtaggtaacattacca 170  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||||||||    
T  22916359 tgaacagtttgcgccaaatattattgatgaaagcatgatccatgtcagagactagtcttctaggtaacattacca 22916433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 22963135 - 22963057
Alignment:
Q  336 tttgcatcaacttgggatttatgaaattaaaataaattgaattaaacaaagatggtaaaaagtgattaggactttcgaa 414  Q
    ||||||| ||||| ||||||| | |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  22963135 tttgcataaactttggatttaaggaatttaaataaattgaattaaacaaggattgtaaaaagtgattaggactttcgaa 22963057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 336 - 414
Target Start/End: Original strand, 23825258 - 23825336
Alignment:
Q  336 tttgcatcaacttgggatttatgaaattaaaataaattgaattaaacaaagatggtaaaaagtgattaggactttcgaa 414  Q
    ||||||| ||||| ||||||| | |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  23825258 tttgcataaactttggatttaaggaatttaaataaattgaattaaacaaggattgtaaaaagtgattaggactttcgaa 23825336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 437 - 512
Target Start/End: Original strand, 20004868 - 20004943
Alignment:
Q  437 tttgggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccat 512  Q
    ||||||||||  |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||    
T  20004868 tttgggagagtttctatcttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccat 20004943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 444 - 514
Target Start/End: Complemental strand, 24469195 - 24469125
Alignment:
Q  444 gagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||||| | ||||||| |||||||||||||    
T  24469195 gagaatctatcttctccttgattttctagggtatgtttttatctttaataatttgtttttagttaccatgt 24469125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 21846368 - 21846448
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| | |||||| |||||||||||||||| ||| |||||||||||| | ||||||| ||||||||||||| |||||    
T  21846368 gggagagagtttatcttctccttgattttctagggtatgtttttatctttaataatttgtttttagttaccatgtgtaact 21846448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 14078434 - 14078505
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| ||| ||||||||| |||||    
T  14078434 tctatcttctccttgattttctaggttatgtttttatctttagtaatttgtttttacttaccatgtttaact 14078505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 14077920 - 14077984
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatg 513  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| |||| |||||||    
T  14077920 tctatcttatccttgattttctaggttatgtttttatctttagtaatttgtttttagataccatg 14077984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 19578194 - 19578274
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| ||||||||| |||||  ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  19578194 gggagagtttctatcttctccttgattatctagagtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 19578274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 19594635 - 19594715
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| ||||||||| |||||  ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  19594635 gggagagtttctatcttctccttgattatctagagtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 19594715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 8066115 - 8066044
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| ||||||  ||||| |||||    
T  8066115 tctatcttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttgtcatgtgtaact 8066044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 14638705 - 14638634
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||| ||||| |||||||||||||| || || | ||||||||||||| |||||    
T  14638705 tctatcttctccttgattttctatgatatgtttttatctttagtaatatggttttagttaccatgtgtaact 14638634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 520
Target Start/End: Complemental strand, 17383144 - 17383062
Alignment:
Q  437 tttgggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||  |||||||| |||||||||||||| | ||| |||||||||||||| |||| || ||||||||||||| |||||    
T  17383144 tttgggagagtttctatcttctccttgattttctaaggtatgtttttatctttagtaattt-tttttagttaccatgtgtaact 17383062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 520
Target Start/End: Original strand, 21153135 - 21153202
Alignment:
Q  453 tcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||| |||||||||||||||| ||| |||||||||||||| ||||||| ||| ||||||||| |||||    
T  21153135 tcttctccttgattttctagggtatgtttttatctttagtaatttgtttttatttaccatgtgtaact 21153202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 444 - 514
Target Start/End: Complemental strand, 24479442 - 24479372
Alignment:
Q  444 gagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||||||   ||||||| | |||||||||||    
T  24479442 gagaatctatcttctccttgattttctagggtatgtttttatctttaaaaatttgttttaagttaccatgt 24479372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 9519174 - 9519093
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatc-tttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| |||||||||||||||  ||| |||||||| |||||| ||||||| ||||||||||||| |||||    
T  9519174 gggagagtttctatcttctccttgattttctagtgtatgtttttatcttttagtaatttgtttttagttaccatgtgtaact 9519093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 520
Target Start/End: Complemental strand, 1636096 - 1636036
Alignment:
Q  460 cttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||||||| ||| |||||||||||||| ||||||| ||||||||| ||| |||||    
T  1636096 cttgattttctagggtatgtttttatctttagtaatttgtttttagttaccgtgtgtaact 1636036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 509
Target Start/End: Original strand, 17822709 - 17822769
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttac 509  Q
    |||||||  |||||||||||||||| ||| |||||||||||||| ||||||| ||||||||    
T  17822709 tctatctgctccttgattttctagggtatgtttttatctttagtaatttgtttttagttac 17822769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 22409240 - 22409311
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||| || ||||| ||||| |||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  22409240 tctatattctccttaattttttagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 22409311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 23007186 - 23007260
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||  |||||||  ||||||  |||||||| ||| |||||||||||||| ||||||| |||||||||||||    
T  23007186 gggagagtttctatctgctccttgtgtttctagggtatgtttttatctttagtaatttgtttttagttaccatgt 23007260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 23781178 - 23781104
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||  |||||||  ||||||  |||||||| ||| |||||||||||||| ||||||| |||||||||||||    
T  23781178 gggagagtttctatctgctccttgtgtttctagggtatgtttttatctttagtaatttgtttttagttaccatgt 23781104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 520
Target Start/End: Complemental strand, 14723078 - 14723009
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| |||||||||||||||| ||| |||||||| || || ||||||| || |||||||||| |||||    
T  14723078 tatcttctccttgattttctagggtatgtttttatcatttgtaatttgttttttgttaccatgtgtaact 14723009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 11193083 - 11193035
Alignment:
Q  441 ggagagaatctatcttttccttgattttctaggatatatttttatcttt 489  Q
    |||||||||||||||| |||||||||||||||| ||| | |||||||||    
T  11193083 ggagagaatctatcttctccttgattttctagggtatgtgtttatcttt 11193035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 13021761 - 13021713
Alignment:
Q  441 ggagagaatctatcttttccttgattttctaggatatatttttatcttt 489  Q
    |||||||||||||||| || ||||||||||||| ||| |||||||||||    
T  13021761 ggagagaatctatcttctctttgattttctagggtatctttttatcttt 13021713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 520
Target Start/End: Original strand, 27123517 - 27123577
Alignment:
Q  460 cttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||||||| ||| ||||| |||||||| ||||||| |||||||| |||| |||||    
T  27123517 cttgattttctagggtatgtttttctctttagtaatttgtttttagttactatgtgtaact 27123577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 512
Target Start/End: Original strand, 22849458 - 22849521
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccat 512  Q
    |||||||| ||||| |||||||||| ||| |||||||||||||  ||||| | |||||||||||    
T  22849458 tctatcttctcctttattttctagggtatgtttttatctttagcaatttgcttttagttaccat 22849521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 514
Target Start/End: Complemental strand, 14075875 - 14075810
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    ||||| || |||||||||||||||  ||| |||||||||||||| ||||||| | | |||||||||    
T  14075875 tctatattctccttgattttctagagtatgtttttatctttagtaatttgttttcaattaccatgt 14075810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 437 - 520
Target Start/End: Complemental strand, 29144061 - 29143978
Alignment:
Q  437 tttgggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||||||| || |||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| |||||    
T  29144061 tttgggagagaatctattttctccttgattttctagggtatatttttttctttagtaatttgtttttagttaccatgtgtaact 29143978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 17629359 - 17629439
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||||||| |||||||| |||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  17629359 gggagagaatctatattttcctttattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 17629439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 17674651 - 17674731
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| ||||||| |||||||| |||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  17674651 gggagataatctatattttcctttattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 17674731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 514
Target Start/End: Complemental strand, 25921972 - 25921908
Alignment:
Q  450 ctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    ||||||| |||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||    
T  25921972 ctatcttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgt 25921908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 24089875 - 24089946
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| |||| || ||||||||||||| |||||    
T  24089875 tctatcttctccttgattttctagggtatgtttttatctttagtaatttatttttagttaccatgtgtaact 24089946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 25531651 - 25531580
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||||||||||||| || ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  25531651 tctatcttctccttgattttcttgggtatgtttttatctttagttatttgtttttagttaccatgtgtaact 25531580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 27908125 - 27908196
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||||||  ||||||||||||| |||||    
T  27908125 tctatcttctccttgattttctagggtatgtttttatctttagtaatttgtctttagttaccatgtgtaact 27908196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 512
Target Start/End: Complemental strand, 25536995 - 25536934
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccat 512  Q
    |||||| |||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||    
T  25536995 tatcttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccat 25536934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 460 - 520
Target Start/End: Original strand, 25886862 - 25886922
Alignment:
Q  460 cttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  25886862 cttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 25886922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 15340392 - 15340321
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| ||||||||| | || ||||||| ||||||||||||| |||||    
T  15340392 tctatcttctccttgattttctagggtatgtttttatctgttgtaatttgtttttagttaccatgtgtaact 15340321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 28929787 - 28929716
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||||||||| |||||| ||| |||||||||||||  ||||||| ||||||||||||| |||||    
T  28929787 tctatcttctccttgattatctagggtatgtttttatctttagcaatttgtttttagttaccatgtgtaact 28929716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 521
Target Start/End: Original strand, 22378481 - 22378559
Alignment:
Q  443 agagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaactt 521  Q
    ||||||| |||||| || ||| |||| |||| ||| |||||||||||||| ||||||| ||||||||||||| ||||||    
T  22378481 agagaatatatcttctcattgcttttttagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaactt 22378559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 519
Target Start/End: Original strand, 27540846 - 27540928
Alignment:
Q  437 tttgggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaac 519  Q
    ||||||||||  |||||||| |||||||||||||||| ||| ||||||| |||||| | ||||  ||||||||||||| ||||    
T  27540846 tttgggagagtttctatcttctccttgattttctagggtatgtttttatatttagtaacttgtgtttagttaccatgtgtaac 27540928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 521
Target Start/End: Original strand, 18121216 - 18121288
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaactt 521  Q
    |||||||| |||||||||||||||| ||| ||||  |||||||  |||| || ||||||||||||| ||||||    
T  18121216 tctatcttctccttgattttctagggtatgttttattctttagcaatttatttttagttaccatgtgtaactt 18121288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 31803756 - 31803827
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||  ||| ||||||||||||||  ||| || ||||||| ||||| |||||    
T  31803756 tctatcttctccttgattttctagagtatgtttttatctttagtactttatttttagttatcatgtgtaact 31803827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 440 - 512
Target Start/End: Complemental strand, 17510344 - 17510272
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccat 512  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||    
T  17510344 gggagagaatctatcttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccat 17510272  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 437 - 520
Target Start/End: Complemental strand, 25233458 - 25233375
Alignment:
Q  437 tttgggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||  |||||||| |||||||||||||||| ||| |||||||||||||| ||||| | ||||||||||||| |||||    
T  25233458 tttgggagagtttctatcttctccttgattttctagggtatgtttttatctttagtaatttgcttttagttaccatgtgtaact 25233375  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 20399225 - 20399145
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||||||| ||||||||| |||||| ||| ||||| |||||||| ||||||| ||||||||| ||| |||||    
T  20399225 gggagagaatctatcttctccttgattatctagggtatgtttttgtctttagtaatttgtttttagttaccgtgtgtaact 20399145  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 23868482 - 23868562
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| |||||||||||| ||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  23868482 gggagagtttctatcttctccttgattttccagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 23868562  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 520
Target Start/End: Original strand, 13313943 - 13314022
Alignment:
Q  441 ggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||| | |||||| |||||||||||||||| |||  ||||||||||||| ||||||| ||||||||||||| |||||    
T  13313943 ggagagattttatcttctccttgattttctagggtatgattttatctttagtaatttgtttttagttaccatgtgtaact 13314022  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 18569995 - 18569924
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||||||| ||||||||||||||   ||||| ||||||||||||| |||||    
T  18569995 tctatcttctccttgattttctaggatatgtttttatctttagtagcttgtttttagttaccatgtgtaact 18569924  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 24583808 - 24583879
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||| ||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  24583808 tctatcttctccttgatcttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 24583879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 520
Target Start/End: Original strand, 24722618 - 24722696
Alignment:
Q  442 gagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||| | ||| ||| |||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  24722618 gagagaatctatcctctccatgactttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 24722696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 452 - 520
Target Start/End: Original strand, 17100944 - 17101012
Alignment:
Q  452 atcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||| |||||||||||||| | ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  17100944 atcttctccttgattttctaaggtatctttttatctttagtaatttgtttttagttaccatgtgtaact 17101012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 25227210 - 25227154
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattag 505  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  25227210 tctatcttctccttgattttctagggtatgtttttatctttagtaatttgttattag 25227154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 26830127 - 26830207
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| |||||||||||||||| ||| ||||||||||||||   ||||| ||||||||||||| |||||    
T  26830127 gggagagtttctatcttctccttgattttctagggtatgtttttatctttagtatcttgtttttagttaccatgtgtaact 26830207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 19265206 - 19265135
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| | |||||||||||||| ||| ||||||||||| || ||||||| ||||||||||||| |||||    
T  19265206 tctatcttcttcttgattttctagggtatgtttttatcttttgtaatttgtttttagttaccatgtgtaact 19265135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 21315769 - 21315698
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| |||| || |||||||| |||| |||||    
T  21315769 tctatcttctccttgattttctagggtatgtttttatctttagtaatttttttttagttactatgtgtaact 21315698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 24389149 - 24389078
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||||||||||| |||| ||| |||||||||||||| |||| || ||||||||||||| |||||    
T  24389149 tctatcttctccttgattttttagggtatgtttttatctttagtaatttttttttagttaccatgtgtaact 24389078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 520
Target Start/End: Complemental strand, 17997648 - 17997587
Alignment:
Q  459 ccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||||| ||| |||||||||||| | ||||||| ||||||||||||| |||||    
T  17997648 ccttgattttctagggtatgtttttatctttactaatttgtttttagttaccatgtgtaact 17997587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 520
Target Start/End: Original strand, 24112405 - 24112474
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| |||||||||||||||| |||  |||||||||| || ||||||| ||||||||||||| |||||    
T  24112405 tatcttctccttgattttctagggtatgcttttatctttggtaatttgtttttagttaccatgtgtaact 24112474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 514
Target Start/End: Complemental strand, 26887933 - 26887869
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||| |||||||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||    
T  26887933 tctatcttctccttgattttctagggtatgtttt-atctttagtaatttgtttttagttaccatgt 26887869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 520
Target Start/End: Original strand, 29381318 - 29381386
Alignment:
Q  452 atcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||| |||||| ||||||||| ||| || ||||||||||| ||||||| ||||||||||||| |||||    
T  29381318 atcttctccttggttttctagggtatgttattatctttagtaatttgtttttagttaccatgtgtaact 29381386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 29766066 - 29766137
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||| ||| |||||||||||||| | ||| |||||||||||||  ||||||| ||||||||||||| |||||    
T  29766066 tctaccttctccttgattttctaaggtatgtttttatctttagaaatttgtttttagttaccatgtgtaact 29766137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 520
Target Start/End: Original strand, 18447565 - 18447634
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| || |||||||| |||| ||| | |||||||||||| ||||||| ||||||||||||| |||||    
T  18447565 tatcttctcattgattttttaggttatctctttatctttagtaatttgtttttagttaccatgtgtaact 18447634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 24109689 - 24109760
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||||||||||||| || ||| |||||||||||| | |||| || ||||||| ||||| |||||    
T  24109689 tctatcttctccttgattttctcgggtatgtttttatctttaataatttatttttagttagcatgtgtaact 24109760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 508
Target Start/End: Original strand, 23890299 - 23890356
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagtta 508  Q
    |||||| |||||||||||||| | ||| ||||||||| |||| ||||||| |||||||    
T  23890299 tatcttctccttgattttctaaggtatgtttttatctatagtaatttgtttttagtta 23890356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 11804173 - 11804093
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||| || ||||||||||||| |||||    
T  11804173 gggagagaatttatcttctccttgattttctaggatttatttttatctttagtaatttttttttagttaccatgtgtaact 11804093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 13278610 - 13278530
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||||||| || |||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  13278610 gggagagaatctatattctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 13278530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 4450110 - 4450031
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||||||  |||||||||||||||| ||| |||| ||||||||| ||||||| ||||||||||||| |||||    
T  4450110 gggagagaatctatctactccttgattttctagggtatgtttt-atctttagtaatttgtttttagttaccatgtgtaact 4450031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 13263699 - 13263779
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| |||||||||||| ||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  13263699 gggagagtttctatcttctccttgattttcaagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 13263779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 13756089 - 13756169
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| |||||||||||||||| ||| |||||||||||||| || |||| ||||||||||||| |||||    
T  13756089 gggagagtttctatcttctccttgattttctagggtatgtttttatctttagtaatctgtttttagttaccatgtgtaact 13756169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 39272113 - 39272193
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||| | |||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  39272113 gggagagtttctatcatctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 39272193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 8977960 - 8978031
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| |||| || ||||||||||||| |||||    
T  8977960 tctatcttctccttgattttctagggtatgtttttatctttagtaatttttttttagttaccatgtgtaact 8978031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 9134235 - 9134164
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||  ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  9134235 tctatcttctccttgattttctagcgtatgtttttatctttagtaatttgtttttagttaccatgtataact 9134164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 3586183 - 3586244
Alignment:
Q  458 tccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  3586183 tccttgattttctaggatatgtttttatctttagt-atttgtttttagttaccatgtgtaact 3586244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 520
Target Start/End: Complemental strand, 10611173 - 10611095
Alignment:
Q  442 gagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||||| | ||||||||| |||| ||| ||||| |||||||| ||||||| ||||||||||||| |||||    
T  10611173 gagagaatctatcttctacttgattttttagggtatgtttttttctttagtaatttgtttttagttaccatgtgtaact 10611095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 1862069 - 1861989
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||||||| ||| |||||||||||| |||  ||||||||||||| ||||||| | | ||||||||| |||||    
T  1862069 gggagagaatctatcttctccatgattttctagggtatgattttatctttagtaatttgttttcaattaccatgtataact 1861989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 18362657 - 18362737
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||| |||||| |  |||||||| |||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  18362657 gggagagaatttatcttctatttgattttatagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 18362737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 12330499 - 12330428
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||| | ||| |||||||||||||| |||| || ||||||||||||| |||||    
T  12330499 tctatcttctccttgattttctacggtatgtttttatctttagtaatttatttttagttaccatgtgtaact 12330428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 23297794 - 23297723
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||||||||| |||||  ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  23297794 tctatcttctccttgattctctagtgtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 23297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 6043576 - 6043506
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||  ||||||||||||||| ||| |||||||||||||| ||||||  ||||||||||||| |||||    
T  6043576 tctatcttccccttgattttctagg-tatgtttttatctttagtaatttgtgtttagttaccatgtgtaact 6043506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 16057872 - 16057943
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||||||||||||| || ||| ||||||||||||||   ||||| ||||||||||||| |||||    
T  16057872 tctatcttctccttgattttctcgggtatgtttttatctttagtatcttgtttttagttaccatgtgtaact 16057943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 2565579 - 2565517
Alignment:
Q  452 atcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    ||||| ||||| |||||||||| ||| ||||||||||| || ||||||| |||||||||||||    
T  2565579 atcttctccttcattttctagggtatgtttttatctttcgtaatttgtttttagttaccatgt 2565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 8318132 - 8318205
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||  ||||| || |||||||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||    
T  8318132 gggagagtttctattttctccttgattttctagggtatgtttt-atctttagtaatttgtttttagttaccatgt 8318205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 25692222 - 25692147
Alignment:
Q  449 tctatcttttccttgattttctaggatatat----ttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| |||||    ||||||||||||| |||| || ||||||||||||| |||||    
T  25692222 tctatcttctccttgattttctagggtatatatgtttttatctttagtaatttatttttagttaccatgtgtaact 25692147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 8878450 - 8878370
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| |||||||||||||| | ||| ||| |||| ||||| |||||||  |||||||||||| |||||    
T  8878450 gggagagtttctatcttctccttgattttctacggtatgtttatatcattagtaatttgtttatagttaccatgtgtaact 8878370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 520
Target Start/End: Complemental strand, 11505700 - 11505648
Alignment:
Q  468 tctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| ||| |||||||||||||| |||| || |||||||||||||||||||    
T  11505700 tctagggtatgtttttatctttagtaatttctttttagttaccatgtctaact 11505648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 4820329 - 4820259
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||||||||||| ||||  || |||||||||||||| ||||||| ||| ||||||||| |||||    
T  4820329 tctatcttctccttgatttt-tagggcatgtttttatctttagtaatttgtttttatttaccatgtgtaact 4820259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 514
Target Start/End: Complemental strand, 17078175 - 17078136
Alignment:
Q  475 tatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  17078175 tatatttttatctttagtaatttgtttttagttaccatgt 17078136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 520
Target Start/End: Complemental strand, 11505578 - 11505528
Alignment:
Q  470 taggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||| ||| |||||||||||||| |||| || |||||||||||||||||||    
T  11505578 taggttatgtttttatctttagtaatttctttttagttaccatgtctaact 11505528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 520
Target Start/End: Complemental strand, 11505638 - 11505588
Alignment:
Q  470 taggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||| ||| |||||||||||||| |||| || |||||||||||||||||||    
T  11505638 tagggtatgtttttatctttagtaatttctttttagttaccatgtctaact 11505588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 520
Target Start/End: Original strand, 8053088 - 8053140
Alignment:
Q  468 tctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| ||| ||| |||||||||| ||||||| ||||||||||||| |||||    
T  8053088 tctagggtatgtttctatctttagtaatttgtttttagttaccatgtgtaact 8053140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 28665916 - 28665836
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||| | ||||||||||||| |||||    
T  28665916 gggagagaatctatcttctccttgattttctagggtatgtttttatctttagtaatttgattttagttaccatgtgtaact 28665836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 444 - 520
Target Start/End: Original strand, 23388194 - 23388270
Alignment:
Q  444 gagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||| || |||||||||||||||| ||| ||||||||||||||  |||||| ||||||||||||| |||||    
T  23388194 gagaatctattttctccttgattttctagggtatgtttttatctttagtagtttgtttttagttaccatgtgtaact 23388270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 16522517 - 16522597
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||| ||| |||||||||||||||| ||| |||||||||||||| ||||||| |||||||||| || |||||    
T  16522517 gggagagtttctaccttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccacgtgtaact 16522597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 512
Target Start/End: Complemental strand, 34131511 - 34131439
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccat 512  Q
    |||||||  |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| ||| |||||||    
T  34131511 gggagagtttctatcttctccttgattttctagggtatgtttttatctttagtaatttgtttttaattaccat 34131439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 15199439 - 15199502
Alignment:
Q  458 tccttgattttctaggatatatttt-tatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||| |||||    
T  15199439 tccttgattttctaggatatgttttttatctttagtaatttgtttttagttaccatgtgtaact 15199502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 520
Target Start/End: Complemental strand, 20859782 - 20859723
Alignment:
Q  461 ttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  20859782 ttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 20859723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 19007509 - 19007580
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| ||||||| |||| | ||||||| |||| |||||||| |||||    
T  19007509 tctatcttctccttgattttctagggtatgtttttatttttaataatttgtttttagataccatgtataact 19007580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 25401409 - 25401480
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||| || ||| ||||||||| || |||||||||||||||||| ||||||| |||||| |||| |||||||    
T  25401409 tctatattctccgtgattttcttgggtatatttttatctttagtaatttgtttttagtttccatatctaact 25401480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 19052492 - 19052430
Alignment:
Q  452 atcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    ||||| |||||||||||||||| | | |||||||||||||| ||||||| ||||||| |||||    
T  19052492 atcttctccttgattttctagggtttgtttttatctttagtaatttgtttttagttatcatgt 19052430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 520
Target Start/End: Original strand, 20314449 - 20314518
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| |||||||||||||||| ||| |||| ||||||||| |||| || ||||||||| ||| |||||    
T  20314449 tatcttctccttgattttctagggtatgttttgatctttagtaatttttttttagttaccttgtgtaact 20314518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 508
Target Start/End: Complemental strand, 17433301 - 17433242
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagtta 508  Q
    |||||||| |||||||||||||||| ||   ||||||||||||| ||||||| |||||||    
T  17433301 tctatcttctccttgattttctagggtaagattttatctttagtaatttgtttttagtta 17433242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 520
Target Start/End: Original strand, 24321204 - 24321279
Alignment:
Q  446 gaatctatcttttccttgattttctaggatata-tttttat-ctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||| ||||| |||||||||| |||  ||||||| ||||||| ||||||| ||||||||||||| |||||    
T  24321204 gaatctatcttctcctt-attttctagggtattgtttttattctttagtaatttgtttttagttaccatgtgtaact 24321279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 17710779 - 17710699
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||||||| |||||||||||||| | ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  17710779 gggagagaatctatcttctccttgattttctacggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 17710699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 7583442 - 7583371
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  7583442 tctatcttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 7583371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 442 - 520
Target Start/End: Original strand, 11252774 - 11252852
Alignment:
Q  442 gagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||||| ||||| |||||||||| ||| | |||||||||||| ||||||| ||||||||||||| |||||    
T  11252774 gagagaatctatcttctccttaattttctagggtatgtgtttatctttagtaatttgtttttagttaccatgtgtaact 11252852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 451 - 520
Target Start/End: Complemental strand, 22171201 - 22171132
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| |||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  22171201 tatcttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtttaact 22171132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 10105727 - 10105656
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| | |||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  10105727 tctatcctctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 10105656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 514
Target Start/End: Complemental strand, 11781985 - 11781920
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| ||||||| |||||    
T  11781985 tctatcttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttatcatgt 11781920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 8968708 - 8968779
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||| |||||||||||| ||| ||||| |||||||| ||||||| ||||||||||||| |||||    
T  8968708 tctatcttctccatgattttctagggtatgtttttttctttagtaatttgtttttagttaccatgtgtaact 8968779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 512
Target Start/End: Complemental strand, 17108115 - 17108052
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccat 512  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| || |||| |||||||||||    
T  17108115 tctatcttctccttgattttctagggtatgtttttatctttagtaatatgtttttagttaccat 17108052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 512
Target Start/End: Original strand, 17336005 - 17336068
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccat 512  Q
    |||||||| || ||||||||||||| ||| |||||||||||||| ||||||| |||||||||||    
T  17336005 tctatcttctcattgattttctagggtatgtttttatctttagtaatttgtttttagttaccat 17336068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 520
Target Start/End: Complemental strand, 16730715 - 16730646
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| |||||||||||||||| ||| |||| ||||||| | ||||||| ||||||||||||| |||||    
T  16730715 tatcttctccttgattttctagggtatgttttaatctttaataatttgtttttagttaccatgtgtaact 16730646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 520
Target Start/End: Complemental strand, 17218008 - 17217935
Alignment:
Q  447 aatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||| |||||||||||||| | ||| ||||||||||||   ||||||| ||||||||||||| |||||    
T  17218008 aatctatcttctccttgattttctaagctatgtttttatctttatgaatttgtttttagttaccatgtgtaact 17217935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 12577953 - 12578024
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||| || ||||||||| ||| |||||||||||||| ||||||| ||| ||||||||| |||||    
T  12577953 tctatcttctccatgtttttctagggtatgtttttatctttagtaatttgtttttaattaccatgtgtaact 12578024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 15165910 - 15165836
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||  |||||||| || ||||||||||||| ||| ||||||| |||||| ||||||| |||||||| ||||    
T  15165910 gggagagtttctatcttctctttgattttctagggtatgtttttatttttagtaatttgtttttagttacaatgt 15165836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 500
Target Start/End: Original strand, 17025310 - 17025370
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgtt 500  Q
    |||||||  |||||||| |||||||||||||||  ||| |||||||||||||| |||||||    
T  17025310 gggagagtttctatcttctccttgattttctagagtatgtttttatctttagtaatttgtt 17025370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 489
Target Start/End: Complemental strand, 37741067 - 37741015
Alignment:
Q  437 tttgggagagaatctatcttttccttgattttctaggatatatttttatcttt 489  Q
    |||||||||||||||||||| ||| | |||||||||| ||| |||||||||||    
T  37741067 tttgggagagaatctatcttctcccttattttctagggtatgtttttatcttt 37741015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 514
Target Start/End: Original strand, 19604472 - 19604537
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||| |||||  ||||||||| ||| |||||||||||||| |||| || |||||| ||||||    
T  19604472 tctatcttctccttatttttctagggtatctttttatctttagtaatttctttttagtttccatgt 19604537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 14572891 - 14572819
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatc-tttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||| ||||||||  ||| |||||||| |||||| ||||||  ||||||||||||| |||||    
T  14572891 tctatcttctccttgtttttctagtgtatgtttttatcttttagtaatttgtgtttagttaccatgtgtaact 14572819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 25095787 - 25095743
Alignment:
Q  441 ggagagaatctatcttttccttgattttctaggatatatttttat 485  Q
    ||||||||| |||||| |||||||||||||||| ||| |||||||    
T  25095787 ggagagaatatatcttctccttgattttctagggtatgtttttat 25095743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 437 - 520
Target Start/End: Complemental strand, 81175 - 81092
Alignment:
Q  437 tttgggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |||  || ||||||||||||| |||||    
T  81175 tttgggagagaatctatcttctccttgattttctagggtatgtttttatctttagtaattattttttagttaccatgtgtaact 81092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 15542964 - 15543038
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||| || ||||||||||    
T  15542964 gggagagaatctatcttctccttgattttctagggtatgtttttatctttagtaatttgttttttgttaccatgt 15543038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 444 - 520
Target Start/End: Complemental strand, 21450220 - 21450144
Alignment:
Q  444 gagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||| |||| || |||| |||||||| |||||    
T  21450220 gagaatctatcttctccttgattttctagggtatatttttatctttagtaatttatttttaggtaccatgtgtaact 21450144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 441 - 520
Target Start/End: Original strand, 21333711 - 21333790
Alignment:
Q  441 ggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||| |||||| |||||||||||||||| |||  ||||||||||||| ||||||| ||||||||||||| |||||    
T  21333711 ggagagaatatatcttctccttgattttctagggtatgcttttatctttagtaatttgtttttagttaccatgtgtaact 21333790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 24055119 - 24055048
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  24055119 tctatattttccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 24055048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 20147630 - 20147556
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||||||||| || |||||||||||| ||| ||| |||||||||||||| ||||||| |||||||||||||    
T  20147630 gggagagaatctatattctccttgattttccagggtatgtttttatctttagtaatttgtttttagttaccatgt 20147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 444 - 520
Target Start/End: Original strand, 18528193 - 18528269
Alignment:
Q  444 gagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||||| |||||||||| ||||| |||  ||||||||||||| ||||||| ||||||||||||| |||||    
T  18528193 gagaatctatcttctccttgatttcctagggtatgcttttatctttagtaatttgtttttagttaccatgtgtaact 18528269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 25403034 - 25403114
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| |||||||||||||||| ||| |||||||||||||| | ||||| ||||||||||||| |||||    
T  25403034 gggagagtttctatcttctccttgattttctagggtatgtttttatctttagtaaattgtttttagttaccatgtataact 25403114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 26611999 - 26612079
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| || ||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  26611999 gggagagtttctatcttctctttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtttaact 26612079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 9402733 - 9402662
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||||| |||||||||| |||||||||||||||| | ||||||| ||||||||||||| |||||    
T  9402733 tctatcttctcctttattttctagggtatatttttatctttaataatttgtttttagttaccatgtgtaact 9402662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 20107278 - 20107207
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| ||||||||| |||| ||||||| ||||||||||||| |||||    
T  20107278 tctatcttctccttgattttctagggtatgtttttatctgtagtaatttgtttttagttaccatgtgtaact 20107207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 520
Target Start/End: Original strand, 15159474 - 15159543
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| |||||||||||||||| ||| ||||||||||| || ||||||| ||||||||||||| |||||    
T  15159474 tatcttctccttgattttctagggtatgtttttatctttggtaatttgtttttagttaccatgtgtaact 15159543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 514
Target Start/End: Original strand, 31234927 - 31234992
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||| |||||||||||||||| ||| |||||||||||| ||||||||| ||| |||||||||    
T  31234927 tctatcttctccttgattttctagggtatgtttttatctttactgatttgtttttaattaccatgt 31234992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 18831624 - 18831545
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| |||||||||||||||| ||| |||||||||||||| |||| || ||||||||||||| |||||    
T  18831624 gggagagtttctatcttctccttgattttctagggtatgtttttatctttagt-atttttttttagttaccatgtgtaact 18831545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 18735207 - 18735278
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||| ||||||||| | | |||||||||||||| ||||||| ||||||||||||| |||||    
T  18735207 tctatcttctccttgcttttctagggtttgtttttatctttagtaatttgtttttagttaccatgtgtaact 18735278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 728617 - 728543
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    ||||||||| ||||||| ||||||||||| |||| ||| |||||||||||||| ||||| | |||||||| ||||    
T  728617 gggagagaaactatcttctccttgattttttagggtatgtttttatctttagtaatttgattttagttacgatgt 728543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 514
Target Start/End: Original strand, 17609866 - 17609930
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| |||||| ||||||    
T  17609866 tctatcttctccttgattttctagg-tatttttttatctttagtaatttgtttttagttgccatgt 17609930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 12209716 - 12209652
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatg 513  Q
    |||||||| |||||||||||| ||  ||| |||||||||||||| ||||||| ||||||||||||    
T  12209716 tctatcttctccttgattttccagagtatgtttttatctttagtaatttgtttttagttaccatg 12209652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 18826807 - 18826727
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| ||||||| |||||||| ||| |||||||||||||| |||||||  |||||| ||||| |||||    
T  18826807 gggagagtttctatcttctccttgaatttctagggtatgtttttatctttagtaatttgtttctagttatcatgtgtaact 18826727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 21983688 - 21983759
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| ||||||||||   ||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  21983688 tctatcttctccttgatttataagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 21983759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 512
Target Start/End: Complemental strand, 22624025 - 22623975
Alignment:
Q  462 tgattttctaggatatatttttatctttagtgatttgttattagttaccat 512  Q
    |||||||||||| ||| |||||||||||||| ||||||| |||||||||||    
T  22624025 tgattttctaggttatgtttttatctttagtaatttgtttttagttaccat 22623975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 27545827 - 27545755
Alignment:
Q  449 tctatcttttccttgattttctaggatat-atttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| |||  ||||||||||||||   ||||| ||||||||||||| |||||    
T  27545827 tctatcttctccttgattttctagggtatgttttttatctttagtatcttgtttttagttaccatgtgtaact 27545755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 512
Target Start/End: Complemental strand, 27972993 - 27972930
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccat 512  Q
    ||||||||  ||||| |||| |||| ||| |||||||||||||| ||||||| |||||||||||    
T  27972993 tctatcttcgccttgtttttatagggtatgtttttatctttagtaatttgtttttagttaccat 27972930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 26021852 - 26021780
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtga-tttgttattagttaccatgtctaact 520  Q
    ||||||||  ||||| ||||||| ||||| |||||||||||||| | |||||  ||||||||||||| |||||    
T  26021852 tctatcttccccttgtttttctaagatatgtttttatctttagtaattttgtctttagttaccatgtgtaact 26021780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 53932 - 53852
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  ||||||||||| ||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  53932 gggagagtttctatcttttctttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 53852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 437 - 520
Target Start/End: Complemental strand, 22425 - 22342
Alignment:
Q  437 tttgggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||  |||||||| ||||| |||||||||| ||| |||||||||||||| ||||||| ||| ||||||||| |||||    
T  22425 tttgggagagtttctatcttctcctttattttctagggtatgtttttatctttagtaatttgtttttaattaccatgtgtaact 22342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 19909661 - 19909732
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| |||||| |||||||||||||| |||||    
T  19909661 tctatcttctccttgattttctagggtatgtttttatctttagtaatttgtgattagttaccatgtgtaact 19909732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 2166634 - 2166705
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||| || |||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  2166634 tctatattctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 2166705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 19575190 - 19575261
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||  ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  19575190 tctatcttctccttgattttctagtgtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 19575261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 520
Target Start/End: Original strand, 20121939 - 20122018
Alignment:
Q  441 ggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||||||||| |||||||||||||||| ||| ||||||||||||||  ||| || ||||||||| ||| |||||    
T  20121939 ggagagaatctatcttctccttgattttctagggtatgtttttatctttagtattttatttttagttaccttgtataact 20122018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 41509610 - 41509539
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| ||||||| ||||| |||||    
T  41509610 tctatcttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttatcatgtgtaact 41509539  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 520
Target Start/End: Complemental strand, 19169519 - 19169451
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| |||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  19169519 tatcttctccttgattttctagggtatgtttttatctttagtaatttgtt-ttagttaccatgtgtaact 19169451  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 14977217 - 14977137
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| |||||||||||||||| ||| |||| ||||||||| |||| || ||||||||||||| |||||    
T  14977217 gggagagtgtctatcttctccttgattttctagggtatgttttcatctttagtaatttatttttagttaccatgtgtaact 14977137  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 16228971 - 16229045
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||  |||||||| |||||||||||||| | ||| |||||||||||||| ||||| | |||||||||||||    
T  16228971 gggagagtttctatcttctccttgattttctatggtatgtttttatctttagtaatttgcttttagttaccatgt 16229045  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 520
Target Start/End: Original strand, 16244679 - 16244748
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| |||||||||||||||| ||| |||||||||||||  ||||||| ||||||| ||||| |||||    
T  16244679 tatcttctccttgattttctagggtatgtttttatctttaggaatttgtttttagttatcatgtgtaact 16244748  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 514
Target Start/End: Original strand, 19170793 - 19170858
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||| |||||||||||||||| ||| ||||| ||| |||| ||||||| |||||||||||||    
T  19170793 tctatcttctccttgattttctagggtatgtttttttctatagtaatttgtttttagttaccatgt 19170858  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 8171148 - 8171068
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  ||||||||  ||||||||||||||| ||| |||||||||||||| ||||| | |||||||| |||| |||||    
T  8171148 gggagagtttctatcttccccttgattttctagggtatgtttttatctttagtaatttgcttttagttactatgtgtaact 8171068  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 8882085 - 8882154
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| |||  || ||||||||||||| |||||    
T  8882085 tctatcttctccttgattttctagggtatgtttttatctttagtaatt--tttttagttaccatgtgtaact 8882154  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 12372938 - 12373009
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||| ||||||||| ||| |||||||||||||| ||||||  ||| ||||||||| |||||    
T  12372938 tctatcttctccttgtttttctagggtatgtttttatctttagtaatttgtctttatttaccatgtgtaact 12373009  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 18457824 - 18457894
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| | |||||||||||||||| ||| |||||||||||||| |||| || ||||||||||||| |||||    
T  18457824 tctatcctctccttgattttctagggtatgtttttatctttagtaattt-tttttagttaccatgtgtaact 18457894  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 514
Target Start/End: Complemental strand, 19910551 - 19910477
Alignment:
Q  437 tttgggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    ||||||||||  ||||||||   |||||||||||||| ||| |||||||||||| | ||||||| |||||||||||||    
T  19910551 tttgggagagtttctatctt---cttgattttctagggtatgtttttatctttaataatttgtttttagttaccatgt 19910477  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 489
Target Start/End: Original strand, 11636532 - 11636581
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatcttt 489  Q
    |||||||| |||||||||||||||||||| |||| ||| |||||||||||    
T  11636532 gggagagagtctatcttttccttgattttttagggtatgtttttatcttt 11636581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 520
Target Start/End: Original strand, 20022542 - 20022611
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| || || |||||||||| ||| |||||||||||||| ||||||  ||||||||||||| |||||    
T  20022542 tatcttctcatttattttctagggtatgtttttatctttagtaatttgtgtttagttaccatgtgtaact 20022611  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 514
Target Start/End: Original strand, 25851653 - 25851717
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgt 514  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| ||||||| |||| || |||||    
T  25851653 tctatcttctccttgattttctagggtat-tttttatctttagtaatttgtttttagctatcatgt 25851717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 512
Target Start/End: Original strand, 9780877 - 9780937
Alignment:
Q  452 atcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccat 512  Q
    ||||| |||||||||||||||| ||| |||||| ||||||| |||| || |||||||||||    
T  9780877 atcttctccttgattttctagggtatgtttttagctttagtaatttatttttagttaccat 9780937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 31284955 - 31285027
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatc-tttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||| ||||||||| |||||||||||| |||||| ||||||  ||||||||| ||| |||||    
T  31284955 tctatcttctccttgtttttctagggtatatttttatcttttagtaatttgtctttagttaccttgtgtaact 31285027  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 20430883 - 20430812
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||| || |||||||||||| |   ||| |||||||||||||| ||||||| |||||||||||||| ||||    
T  20430883 tctatattctccttgattttcaatagtatgtttttatctttagtaatttgtttttagttaccatgtcaaact 20430812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 19533246 - 19533166
Alignment:
Q  440 gggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||| |||||||||||||||  ||| |||||||||||  |   ||||| ||||||||||||| |||||    
T  19533246 gggagagtttctatcttctccttgattttctagtgtatgtttttatcttttatatcttgtttttagttaccatgtgtaact 19533166  T

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Target: scaffold0016 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 444 - 520
Target Start/End: Complemental strand, 4274 - 4198
Alignment:
Q  444 gagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||| || |||||||||||||||| ||| ||||||||||||||  |||||| ||||||||||||| |||||    
T  4274 gagaatctattttctccttgattttctagggtatgtttttatctttagtagtttgtttttagttaccatgtgtaact 4198  T

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Target: scaffold0263 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 16699 - 16624
Alignment:
Q  445 agaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||| |||| || |||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |||||    
T  16699 agaagctattttctccttgattttctagggtatgtttttatctttagtaatttgtttttagttaccatgtgtaact 16624  T

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Target: scaffold0032 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 437 - 520
Target Start/End: Original strand, 102333 - 102416
Alignment:
Q  437 tttgggagagaatctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||||||||  |||||||| | |||||||||||||  |||||||||||| ||||| ||||||| ||||||||||||| |||||    
T  102333 tttgggagagtttctatcttcttcttgattttctagagtatatttttatcgttagtaatttgtttttagttaccatgtgtaact 102416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0451 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 5162 - 5091
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||  |||||||||||||||| |||  ||||||||||||| ||||||| ||||||||||||| |||||    
T  5162 tctatctactccttgattttctagggtatgattttatctttagtaatttgtttttagttaccatgtgtaact 5091  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 520
Target Start/End: Complemental strand, 73101 - 73032
Alignment:
Q  451 tatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||| |||||||||||||||| ||| |||||| ||||||| |||| || ||||||||||||| |||||    
T  73101 tatcttctccttgattttctagggtatgtttttaactttagtaatttttttttagttaccatgtgtaact 73032  T

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Target: scaffold1156 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1156
Description:

Target: scaffold1156; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 520
Target Start/End: Complemental strand, 676 - 620
Alignment:
Q  464 attttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||||| ||| ||||||||||| || ||||||| ||||||||||||| |||||    
T  676 attttctagggtatgtttttatcttttgtaatttgtttttagttaccatgtgtaact 620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 509
Target Start/End: Complemental strand, 11896 - 11836
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatctttagtgatttgttattagttac 509  Q
    |||||||| |||||||||||||||| ||| |||||||| ||||| ||||||| ||| ||||    
T  11896 tctatcttctccttgattttctagggtatgtttttatcattagtaatttgtttttatttac 11836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 520
Target Start/End: Complemental strand, 2830 - 2763
Alignment:
Q  452 atcttttccttgattttctaggatatatttttatctttagtgatttgttattagttaccatgtctaact 520  Q
    ||||| ||||| |||||||||| ||| |||||||||||||| |||| || |||||||  ||||||||||    
T  2830 atcttctccttaattttctagggtatgtttttatctttagtaattt-tttttagttattatgtctaact 2763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 520
Target Start/End: Original strand, 244485 - 244557
Alignment:
Q  449 tctatcttttccttgattttctaggatatatttttatc-tttagtgatttgttattagttaccatgtctaact 520  Q
    |||||||| |||||| ||||||||  ||| |||||||| |||||| ||||||  ||||||||||||| |||||    
T  244485 tctatcttctccttgtttttctagtgtatgtttttatcttttagtaatttgtgtttagttaccatgtgtaact 244557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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