View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10139_low_1 (Length: 759)
Name: NF10139_low_1
Description: NF10139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10139_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 215 - 740
Target Start/End: Complemental strand, 43090992 - 43090464
Alignment:
| Q |
215 |
atacacacacattgaagaaatttagcagaagaagaagttgatatatttgttataactataagggaagggaagattaactaggaatgcattcaagagtgtg |
314 |
Q |
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| T |
43090992 |
atacacacacattgaagaaatttagcagaagaagaagttgatatatttgttataactataagggatgggaagattaactaggaatgcattcaagagtgtg |
43090893 |
T |
|
| Q |
315 |
tcagatattttaggacactgaa-----gtatctatcttttttaaggacaagtcgctcatagggagggacagatgaatgaatgaacattgaacatacatat |
409 |
Q |
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| T |
43090892 |
tcagatattttaggacactgaactgaagtatctatcttttttaaggacaagtcgctcatagggagggacagatgaatgaatgaacattgaacatacatat |
43090793 |
T |
|
| Q |
410 |
aatttcactgtgggcctcttctgtttcacttctcttctttttctgagttccatggacaattttgggtctttcactttccaccacttcttcttttacaact |
509 |
Q |
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| T |
43090792 |
aatttcactgtgggcctcttctgtttcacttctcttctttttctgagttccatggacaattttgggtctttcactttccaccacttcttcttttacaact |
43090693 |
T |
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| Q |
510 |
tttgaactgctttacctttcaagaatttgattcttccaaggtgattcttttttactacatnnnnnnnttctatttgtttaatagtaacataacatggttt |
609 |
Q |
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| T |
43090692 |
tttgaactgctttacctttcaagaatttgattcttccaaggtgtttcttttttactacat--aaaaattctatttgtttaatagtaacataacatggttt |
43090595 |
T |
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| Q |
610 |
gttactttgtaagttgttcatgtgtgtaatgtataaagccccacaatgcaatgtcacactctatacattatatacttcattattttaatgttgtttgatt |
709 |
Q |
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| T |
43090594 |
gttactttgtaagttgttcatgtgtgtaatgtataaagccccacaatgcaatgtcacactctatatattatatacttcattattttaatgttgtttgatt |
43090495 |
T |
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| Q |
710 |
ttgctttccatgcttcaccccatgttccaga |
740 |
Q |
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| T |
43090494 |
ttgctttccatgcttcaccccatgttccaga |
43090464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 43091246 - 43091052
Alignment:
| Q |
20 |
gtatgtattaggtagtagtagggtgttggagatggaaaaaggaacaatgttgattcatctaaaaagctatcttttattggttcagctttaatgcataaaa |
119 |
Q |
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| T |
43091246 |
gtatgtattaggtagtagtagggtgttggagatggaaaaaggaacaatgttgattcatctaaaaagctatcttttattggttcagctttaatgcataaaa |
43091147 |
T |
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| Q |
120 |
gtaacagaaccatattcagaagaaagaaagatgaattattcgatttctttttacgagtcacacaatcacaaactgtttctttgatttagggagtt |
214 |
Q |
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| T |
43091146 |
gtaacagaaccatattcagaagaaagaaagatgaattattcgatttctttttacgagtcacacaatcacaaactttttctttgatttagggagtt |
43091052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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