View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10139_low_4 (Length: 356)
Name: NF10139_low_4
Description: NF10139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10139_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 28314632 - 28314303
Alignment:
| Q |
19 |
aatggtactatcac--ctacgtccataccttaatcatatttacttgagagatttaattgaacatgaaggtgctgcatatctagctgaaaatctacggtac |
116 |
Q |
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| T |
28314632 |
aatggtactatcacacctacgtccataccttaatcatatttacttgagagatttaattgaacatgaaggtgctgcatatctagctgaaaatctacggcac |
28314533 |
T |
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| Q |
117 |
gattcttcgtcgtcctccatcaaaccctcatcaaagttctgagaatagcttaaaggatcataaccaaagccaccagttgatttgttgcaagtgttttttc |
216 |
Q |
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| T |
28314532 |
gattcttcgtcgtcctccatcaaaccctcatcaaagttctgagaatagcttaaaggatcataaccaaagccaccggttgatttgttgcaagtgttttttc |
28314433 |
T |
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| Q |
217 |
tctttgtccaaggaagcttcaatttgaaacatccccaacatgaaagtgtaaatattctaggaggtgatgaatttttctccattagtttgagaaagcttca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28314432 |
tctttgtccaaggaagcttcaatttgaaacatccccaacatgaaagtgtaaaaattctaggaggtgatgaatttttctccattagtttgagaaagcttca |
28314333 |
T |
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| Q |
317 |
tggaaattaaacttgaatagaatgcctttg |
346 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28314332 |
tggaaattaaacttgaatagaatgcctttg |
28314303 |
T |
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