View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10139_low_8 (Length: 245)

Name: NF10139_low_8
Description: NF10139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10139_low_8
NF10139_low_8
[»] chr4 (4 HSPs)
chr4 (1-237)||(48698581-48698817)
chr4 (1-237)||(30946943-30947179)
chr4 (1-237)||(42269224-42269460)
chr4 (1-237)||(2002204-2002440)
[»] chr3 (4 HSPs)
chr3 (1-237)||(5820035-5820271)
chr3 (1-237)||(42588269-42588505)
chr3 (1-105)||(54544598-54544702)
chr3 (4-53)||(25877805-25877854)
[»] chr8 (2 HSPs)
chr8 (1-237)||(9440851-9441087)
chr8 (1-237)||(24595251-24595487)
[»] chr5 (2 HSPs)
chr5 (1-237)||(41721731-41721967)
chr5 (1-237)||(34355331-34355567)
[»] chr2 (3 HSPs)
chr2 (1-237)||(828800-829036)
chr2 (4-235)||(13841680-13841907)
chr2 (1-59)||(28714582-28714640)
[»] chr6 (5 HSPs)
chr6 (1-237)||(26977653-26977889)
chr6 (1-237)||(27875469-27875705)
chr6 (3-137)||(21964817-21964951)
chr6 (1-104)||(1473224-1473327)
chr6 (118-233)||(18148080-18148195)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-237)||(28795-29031)
[»] chr7 (1 HSPs)
chr7 (1-237)||(7506336-7506572)
[»] chr1 (1 HSPs)
chr1 (3-134)||(34972958-34973089)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 48698581 - 48698817
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  48698581 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccacc 48698680  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48698681 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 48698780  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  48698781 taattatgaaagaatcaaatctcttgtaccaacatct 48698817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 30946943 - 30947179
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  30946943 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttattggggcctaccacc 30947042  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947043 aatatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 30947142  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  30947143 taattatgaaagaatcaaatctcttgtaccaacatct 30947179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42269460 - 42269224
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42269460 ccctaagatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccacc 42269361  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42269360 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgctgtaatcgaggc 42269261  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  42269260 taattatgaaagaatcaaatctcttgtaccaacatct 42269224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2002440 - 2002204
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| | |||| ||||||||||||| ||||||||     
T  2002440 ccctaaaatcttgtttgctggccccaagtccttcatatcgaactccctagccaattgtgcctttaattcttagacttgatctttgttgggtcctaccacc 2002341  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    ||||||||||||||| |||||| |||||||||||||||||||  | ||||||| |||||||| ||||||||||||||| |||||||||||||  | ||||    
T  2002340 aacatgtcatccacaaacaacaacaaaatgataaaatcattattaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtatccaaggc 2002241  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    ||| |||||||||||||||||||||||||||||||||    
T  2002240 taactatgaaagaatcaaatctcttgtaccaacatct 2002204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5820035 - 5820271
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5820035 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccacc 5820134  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5820135 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 5820234  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  5820235 taattatgaaagaatcaaatctcttgtaccaacatct 5820271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42588505 - 42588269
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||| |||||| ||||||||||||| ||||||||     
T  42588505 ccctaaaatcttgtttgctggccccaagtccttcatatcgaactccctagccaattgtgcatttaattcttggacttgatctttgttgggtcctaccacc 42588406  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    |||||||||||||||||||||| |||||||||||||||||||  | ||||||| |||||||| ||||||||||||||| |||||||||||||  | ||||    
T  42588405 aacatgtcatccacatacaacaacaaaatgataaaatcattattaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtatccaaggc 42588306  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    ||| |||||||||||||||||||||||||||||||||    
T  42588305 taactatgaaagaatcaaatctcttgtaccaacatct 42588269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 54544702 - 54544598
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||     
T  54544702 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcttagacccgatctttgttggggcctaccacc 54544603  T
Q  101 aacat 105  Q
    |||||    
T  54544602 aacat 54544598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 25877854 - 25877805
Alignment:
Q  4 taaaatcttgtttgctggtcccaagtctttcatatcgaactccctagcca 53  Q
    ||||||||||||| |||| ||  |||| ||||||||||||||||||||||    
T  25877854 taaaatcttgttttctggcccagagtccttcatatcgaactccctagcca 25877805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9440851 - 9441087
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9440851 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccacc 9440950  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9440951 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgctgtaatcgaggc 9441050  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  9441051 taattatgaaagaatcaaatctcttgtaccaacatct 9441087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 24595251 - 24595487
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||| |||||||| |||||||| ||||| |||||| ||||||||||||| ||||||||     
T  24595251 ccctaaaatcttgtttgctggccccaagtccttcatattgaactctctagccaattgtgcctttaattcttggacttgatctttgttgggtcctaccacc 24595350  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    |||||||||||||||||||||| |||||||||||||||||||  | ||||||| |||||||| ||||||||||||||| |||||||||||||  | ||||    
T  24595351 aacatgtcatccacatacaacaacaaaatgataaaatcattattaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtatccaaggc 24595450  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    ||| |||||||||||||||||||||||||||||||||    
T  24595451 taactatgaaagaatcaaatctcttgtaccaacatct 24595487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41721967 - 41721731
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41721967 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccacc 41721868  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41721867 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgctgtaatcgaggc 41721768  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  41721767 taattatgaaagaatcaaatctcttgtaccaacatct 41721731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34355567 - 34355331
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  34355567 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcctaccacc 34355468  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34355467 aacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 34355368  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  34355367 taattatgaaagaatcaaatctcttgtaccaacatct 34355331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 829036 - 828800
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  829036 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccacc 828937  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  828936 aacatgtcatccacatacaacagcaaaatgataaaatcattatcatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 828837  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  828836 taattatgaaagaatcaaatctcttgtaccaacatct 828800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 13841680 - 13841907
Alignment:
Q  4 taaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccactaac 103  Q
    |||||||||||||||||||||||||||    ||||||||| | |||||||| | || || |||||||| ||||| |||||||||||| |||||||| ||     
T  13841680 taaaatcttgtttgctggtcccaagtc----atatcgaacacactagccaattttgtctgcaattcctcgactcaatctttgttgggtcctaccaccaat 13841775  T
Q  104 atgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaa 203  Q
    ||||| |||| | |||||| ||||||||||||||| ||| ||| |||   |||| |||||||||||||| || |||| |||||||||||||  |||||||    
T  13841776 atgtcgtccatacacaacaacaaaatgataaaatcgttatcataaaaaaatttgcagtacgtacaatggcctaaactcagtctgttgtaatgaaggctaa 13841875  T
Q  204 ttatgaaagaatcaaatctcttgtaccaacat 235  Q
    |||| ||||||| |||| ||||||| ||||||    
T  13841876 ttatcaaagaattaaatatcttgtagcaacat 13841907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28714640 - 28714582
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtg 59  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  28714640 ccctaaaatcttgtttgttggtcccaagtctttcatatcgaactccctaaccaactgtg 28714582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 26977653 - 26977889
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||     
T  26977653 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcttggacccgatctttgttggggcctaccacc 26977752  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26977753 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 26977852  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  26977853 taattatgaaagaatcaaatctcttgtaccaacatct 26977889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27875469 - 27875705
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||     
T  27875469 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcttggactcgatcttttttggggcctaccacc 27875568  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  27875569 aatatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgttcaatggtcttaactaagtctgttgtaatcgaggc 27875668  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  27875669 taattatgaaagaatcaaatctcttgtaccaacatct 27875705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 21964951 - 21964817
Alignment:
Q  3 ctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccactaa 102  Q
    ||||||||||||||  | |||||||||||||||||| ||||||||||||||||| ||  |||||||| || ||| | |||||||||||||||||||| ||    
T  21964951 ctaaaatcttgtttattagtcccaagtctttcatattgaactccctagccaactatgtattcaattcatgaactaggtctttgttggggcctaccaccaa 21964852  T
Q  103 catgtcatccacatacaacagcaaaatgataaaat 137  Q
    ||||| ||||||||||||||| ||| |||||||||    
T  21964851 catgtaatccacatacaacagtaaagtgataaaat 21964817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 1473224 - 1473327
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    ||||||||||||||||||||| |||||||| |||||||| |||||||| ||||| |||||||| ||||| |||||| ||||||||||||| ||||||||     
T  1473224 ccctaaaatcttgtttgctggacccaagtccttcatatcaaactccctggccaattgtgcctttaattcttggacttgatctttgttgggtcctaccacc 1473323  T
Q  101 aaca 104  Q
    ||||    
T  1473324 aaca 1473327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 18148080 - 18148195
Alignment:
Q  118 caacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatca 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||  ||  ||| | ||| ||||||||||||  ||||||||||||||||||    
T  18148080 caacagcaaaatgataaaatcattaccataaaaccttttgtagtatgtacaacagtgagaaattagtttgttgtaatcgaaactaattatgaaagaatca 18148179  T
Q  218 aatctcttgtaccaac 233  Q
    | | ||||||||||||    
T  18148180 attgtcttgtaccaac 18148195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28795 - 29031
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||||     
T  28795 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaattgtgccttcaattcccggactcgacctttgttgggtcctaccacc 28894  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28895 aacatgtcatccacatacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaattgaggc 28994  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28995 taattatgaaagaatcaaatctcttgcaccaacatct 29031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 7506336 - 7506572
Alignment:
Q  1 ccctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccact 100  Q
    ||||||||||||||||||||  |||||||  ||||||||||||||||||||||| | |||||| ||||| |||||| ||||||||||||| ||||||||     
T  7506336 ccctaaaatcttgtttgctgaccccaagttcttcatatcgaactccctagccaattatgcctttaattcttggacttgatctttgttgggtcctaccacc 7506435  T
Q  101 aacatgtcatccacatacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggc 200  Q
    |||||||||||||||||||| | ||||||||||||||||||| || ||||||| |||||||| ||||||||||||||| ||||||||||||| || ||||    
T  7506436 aacatgtcatccacatacaataacaaaatgataaaatcattatcaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtattcaaggc 7506535  T
Q  201 taattatgaaagaatcaaatctcttgtaccaacatct 237  Q
    ||| |||||||||||||||||||||||||||||||||    
T  7506536 taactatgaaagaatcaaatctcttgtaccaacatct 7506572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 34973089 - 34972958
Alignment:
Q  3 ctaaaatcttgtttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccactaa 102  Q
    |||||| || ||||||| |||||||||||||||||| ||| |||||| |||| |||||||||||| | |||||   || |||||||||||||| ||| ||    
T  34973089 ctaaaacctggtttgctagtcccaagtctttcatattgaattccctaaccaattgtgccttcaatacttggacctaatatttgttggggcctaacaccaa 34972990  T
Q  103 catgtcatccacatacaacagcaaaatgataa 134  Q
    |||||| |||| |||||| | |||||| ||||    
T  34972989 catgtcgtccatatacaataacaaaataataa 34972958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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