View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_1 (Length: 717)
Name: NF10140A_low_1
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_1 |
 | |
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| [»] scaffold0035 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 238 - 696
Target Start/End: Original strand, 3036378 - 3036837
Alignment:
| Q |
238 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036378 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
3036477 |
T |
|
| Q |
338 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
437 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036478 |
tctaatgatgtgactgcactcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
3036577 |
T |
|
| Q |
438 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacac |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036578 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaa |
3036677 |
T |
|
| Q |
538 |
agattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatgg |
636 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
3036678 |
agattctattgagtgttataagtgtcacaagctgggacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatgg |
3036777 |
T |
|
| Q |
637 |
tgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036778 |
tgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
3036837 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 238 - 696
Target Start/End: Original strand, 16863125 - 16863584
Alignment:
| Q |
238 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
337 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||| ||||||| ||| | ||| |
|
|
| T |
16863125 |
gacaacacatggtgagaagatggatcaaacacttgttgttgaaaagattctgagatctttaacaagtaaatttaattacgtgctgtgctcaattcatgaa |
16863224 |
T |
|
| Q |
338 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
437 |
Q |
| |
|
|| |||||||| ||| || ||| || |||||||||| || || |||||||||||||||| |||||| ||| |||| |||||||||||||||||||| | |
|
|
| T |
16863225 |
tcaaatgatgtaactacactctcaattaatgaacttcatagcagtttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaac |
16863324 |
T |
|
| Q |
438 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacac |
537 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||| | |||| |||||||||||||||||||||||||| |||||||| |||||| |||||||| |||| |
|
|
| T |
16863325 |
aagctttgaaggcatctaatggtggaagaggatctgtaggatatggtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaa |
16863424 |
T |
|
| Q |
538 |
agattctattgagtgtta-taagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatgg |
636 |
Q |
| |
|
| | |||| || || ||||||||| |||||||||||||||| ||||||||||| ||||||| | |||||||| | |||| | | ||||||||||| |
|
|
| T |
16863425 |
tggaagtgttgaatgctacaaagtgtcacaagctgggacactatcaaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatgg |
16863524 |
T |
|
| Q |
637 |
tgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
696 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16863525 |
tgaattgcttctgatggctcaatcatgtttgaacacaaatgccaaagatgaggtatggtt |
16863584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 247 - 696
Target Start/End: Original strand, 20528758 - 20529205
Alignment:
| Q |
247 |
tggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgat |
346 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
20528758 |
tggtgaaaagatggatcaaactctgcttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgat |
20528857 |
T |
|
| Q |
347 |
gtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttga |
446 |
Q |
| |
|
||||| || | | ||| ||||| | || ||||| |||||||||||||||| |||||| |||||||| || ||||||| ||||| |||||||||||||| |
|
|
| T |
20528858 |
gtgacaacactttccattaatgaattacatagtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttga |
20528957 |
T |
|
| Q |
447 |
aggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctat |
546 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||| ||| |||||||||||||||||| | ||||||| || | |||||||| |||| ||||| | |
|
|
| T |
20528958 |
aggtttctaatggtggaagaggatctgtgggatatgggagaggaagagggcgttcaag-caaagaggaagatgtggaggaagaattaaca-agatttagt |
20529055 |
T |
|
| Q |
547 |
tgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgctt |
646 |
Q |
| |
|
||| || ||||||||||| |||| |||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | | |
|
|
| T |
20529056 |
tgaatgcaataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcat |
20529155 |
T |
|
| Q |
647 |
ctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
696 |
Q |
| |
|
|| ||||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
20529156 |
ctcatggctcaaacatgattgaacacaaatgtcaaagatgaggtatggtt |
20529205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 5832045 - 5831861
Alignment:
| Q |
25 |
aaggaagagttgctgataattcaattgggccattagagatttgtgtggtgaaaaatggcacgtttgaggaactaatggattatgcaatatcgcgtggtgc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5832045 |
aaggaagagttgctgataattcaattgggccattagagattcgtgtggtgaaaaatggcacgtttgaggaactaatggattatgcaatatcgcgtggtgc |
5831946 |
T |
|
| Q |
125 |
aagtatcaatcagtataaagttcctaggtgcgtgagtttcactcctataatggaacttcttgactctagggtggtatcagttcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5831945 |
aagtatcaatcagtataaagttcctaggtgcgtgagtttcactcctataatggaacttcttgactctagggtggtatcagttcat |
5831861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 5823994 - 5824161
Alignment:
| Q |
25 |
aaggaagagttgctgataattcaattgggccattagagatttgtgtggtgaaaaatggcacgtttgaggaactaatggattatgcaatatcgcgtggtgc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| | ||||||||| |||||| ||||||| |
|
|
| T |
5823994 |
aaggaagagttgctgataattcaattgggccattagagattcgtgtggtgaaaaatggcacattcgaggatttgatggattattatatatcgtgtggtgc |
5824093 |
T |
|
| Q |
125 |
aagtatcaatcagtataaagttcctaggtgcgtgagtttcactcctataatggaacttcttgactcta |
192 |
Q |
| |
|
| || ||||| |||||||||||||||||||||||| |||| ||| || |||||||||||||||||| |
|
|
| T |
5824094 |
atcgattaatcaatataaagttcctaggtgcgtgagtctcacacctgtagtggaacttcttgactcta |
5824161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 238 - 696
Target Start/End: Complemental strand, 40613245 - 40612799
Alignment:
| Q |
238 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
337 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
40613245 |
gacaacacatggtgagaagatggatcaaacgctggttgttgaaaagattttgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaa |
40613146 |
T |
|
| Q |
338 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
437 |
Q |
| |
|
|| || || || ||| || | | || ||||| | |||||||| |||||||||||||||| || ||| |||||||| |||||||| |||||| |||| | |
|
|
| T |
40613145 |
tcaaacgacgtcactacactatcaattgatgagttgcagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaac |
40613046 |
T |
|
| Q |
438 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacac |
537 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| | |||| | ||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
40613045 |
aagctttgaaggtttccaatggtgaaagaggtttcgtggggtatggtagaggaagaggacgttcaggtgctagaggaa------------gaatcaacaa |
40612958 |
T |
|
| Q |
538 |
agattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggt |
637 |
Q |
| |
|
|| | ||||||||| |||||||| | || |||||||||| |||||||| ||||| ||||||| | ||||||| || | |||| | |||||||||||| |
|
|
| T |
40612957 |
agcaagtgttgagtgttttaagtgtcgcaagttgggacactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggt |
40612858 |
T |
|
| Q |
638 |
gaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
696 |
Q |
| |
|
||||| ||||| ||||| ||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
40612857 |
gaattacttcttatggcccaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
40612799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 243 - 450
Target Start/End: Original strand, 20542082 - 20542289
Alignment:
| Q |
243 |
cacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaa |
342 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || |
|
|
| T |
20542082 |
cacatggtgagaagatggatcaaacgctggttgttgaaaagattctgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaa |
20542181 |
T |
|
| Q |
343 |
tgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagct |
442 |
Q |
| |
|
||| || ||| | | | || ||||| | |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
20542182 |
tgacgtcactacgctatcaattgatgagttgcagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagct |
20542281 |
T |
|
| Q |
443 |
ttgaaggt |
450 |
Q |
| |
|
|||||||| |
|
|
| T |
20542282 |
ttgaaggt |
20542289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 508 - 696
Target Start/End: Original strand, 20542323 - 20542511
Alignment:
| Q |
508 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
607 |
Q |
| |
|
|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
|
|
| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
|
| Q |
608 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
696 |
Q |
| |
|
||||| || | |||| | ||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
20542511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 78763 - 78938
Alignment:
| Q |
33 |
gttgctgataattcaattgggccattagagatttgtgtggtgaaaaatggcacgtttgaggaactaatggattatgcaatatcgcgtggtgcaagtatca |
132 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||| | || ||||| | ||| || |||||||| || |||||||||||||| || | ||||| || | |
|
|
| T |
78763 |
gttgctgatcattcaattggaccattggagataagggttgtgaagagtggaacttttgaggagcttatggattatgcaatctcaagaggtgcttcaataa |
78862 |
T |
|
| Q |
133 |
atcagtataaagttcctaggtgcgtgagtttcactcctataatggaacttcttgactctagggtggtatcagttca |
208 |
Q |
| |
|
|||| ||||||||||| ||||| || | ||| |||||||||||||| ||| | |||||||||||||| || ||||| |
|
|
| T |
78863 |
atcaatataaagttccaaggtgtgttaattttactcctataatggagcttttggactctagggtggtctctgttca |
78938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 23940233 - 23940152
Alignment:
| Q |
270 |
tggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgatgtgact |
352 |
Q |
| |
|
|||| |||||||||||| | ||||| ||| |||| |||||||||| ||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
23940233 |
tggtggttgagaagattttaagatcatta-caagcaagttcaattgtgtggtgtgttccattgaagaatcaaatgatgtgact |
23940152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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