View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_101 (Length: 341)
Name: NF10140A_low_101
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_101 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 185 - 335
Target Start/End: Complemental strand, 7246474 - 7246324
Alignment:
| Q |
185 |
tctccttgaacaacaacagcagcagcataaactcaccttcttctttccctttctctacttcatccatggcttgtcatgatcagtcacaatctttttcaca |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7246474 |
tctccttgaacaacaacagcagcagcataaactcaccttcttctttccctttctctacttcatccatggcttgtcatgatcagtcacaatctttttcaca |
7246375 |
T |
|
| Q |
285 |
atcctatcaaaactcttctttaaacccttactattactctcaatcaattac |
335 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7246374 |
atcctaccaaaactcttctttaaacccttactattactctcaatcaattac |
7246324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 7246650 - 7246532
Alignment:
| Q |
9 |
agatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7246650 |
agatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtg |
7246551 |
T |
|
| Q |
109 |
gaactagtagtttcttctt |
127 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7246550 |
gaactagtagtttcttctt |
7246532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 13137278 - 13137222
Alignment:
| Q |
55 |
aagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
111 |
Q |
| |
|
||||| |||||| | ||||||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
13137278 |
aagtattgtgaacgtcacatgcacagaggtcgaaatcgttcaagaaagcttgtggaa |
13137222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 52051973 - 52052075
Alignment:
| Q |
9 |
agatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtg |
108 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
52051973 |
agatggaaagaaatggagatgttcaaaagaagcatatccagattcaaagtactgtgaaaggcacatgcatagagggaaaaaccgttcaagaaagcctgtg |
52052072 |
T |
|
| Q |
109 |
gaa |
111 |
Q |
| |
|
||| |
|
|
| T |
52052073 |
gaa |
52052075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 18199903 - 18199801
Alignment:
| Q |
9 |
agatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtg |
108 |
Q |
| |
|
|||||| || ||||||||||||||||| |||||||||||||| || || |||||||||||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
18199903 |
agatggaaaaaaatggagatgctcaaaagaagcatatccagattctaaatactgtgaaagacacatgcatagaggaaaaaaccgttcaagaaagcctgtg |
18199804 |
T |
|
| Q |
109 |
gaa |
111 |
Q |
| |
|
||| |
|
|
| T |
18199803 |
gaa |
18199801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 42091957 - 42092016
Alignment:
| Q |
54 |
aaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaact |
113 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
42091957 |
aaagtactgtgaaagacacatgcatcgtggtagaaaccgttcaagaaagcctgtggaact |
42092016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 399100 - 399189
Alignment:
| Q |
22 |
tggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
111 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| ||||||||||| | ||||||||| | || | |||||||||||||||||||||||| |
|
|
| T |
399100 |
tggaggtgctcgaaggaagcatacccagactccaagtactgtgagcgccacatgcaccgtggccgcaaccgttcaagaaagcctgtggaa |
399189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University