View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_102 (Length: 338)
Name: NF10140A_low_102
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_102 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 326
Target Start/End: Original strand, 9985264 - 9985583
Alignment:
| Q |
7 |
agtgtatatgcagtgaaagtaagtgatgtaactttccgcaacataagaggaacatctattgctaaagatgtaattcaattacattgtgatgaagccataa |
106 |
Q |
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| T |
9985264 |
agtgcatatgcagtgaaagtaagtgatgtaactttccgcaacataagaggaacatctattgctaaacatgcaattcaattacattgtgatgaagacataa |
9985363 |
T |
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| Q |
107 |
cttgcacaaacattatacttgaagggattaacataacatcttctataggagaggaaattcatgcatcatgcaaaaatgtaaatggggtatgcacttcatg |
206 |
Q |
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| T |
9985364 |
cttgcacaaacattatacttgaagggattaacataacatcttctataggagaggaagttcatgcatcatgcaaaaatgtaaatggagtatgcacttcatg |
9985463 |
T |
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| Q |
207 |
tataccttatgttccatgtctttccctagagtgaccaagtttttgtgacaatttgtgtccatattatattgtaggctaccatataggccaagaaaattgt |
306 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9985464 |
cataccttatgttccatgtctttctctagagtgaccaagtttttgtgacaatttgtgtccatattatattgtaggctaccatataggccaagaaaattgt |
9985563 |
T |
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| Q |
307 |
gataggccctaaattatatt |
326 |
Q |
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|||||||||||||||||||| |
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| T |
9985564 |
gataggccctaaattatatt |
9985583 |
T |
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