View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_108 (Length: 333)
Name: NF10140A_low_108
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_108 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 29932349 - 29932044
Alignment:
| Q |
11 |
ataatatgatgtgttttggttcatacagtcaacttgacctagtgtactgtaattttattgtgcttgtttgaaacatacatagttaatgctaaattatatt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29932349 |
ataatatgatgtgttttggttcatacagtcaacttgacctagtgtactgtaattttactgtgcttgtttgaaacatacatagttaatgctaaattatatt |
29932250 |
T |
|
| Q |
111 |
atttgttgtttatataggcttctagttgcatcgatgcaatcaatatgtttagagggacttggtggtgagagaaaggttgatcctagattgcaagaaacaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29932249 |
atttgttgtttatataggcttctagttgcatcgatgcaatcaatatgtttagagggacttggtggtgagagaaaggttgatcctagattgcaagaaacaa |
29932150 |
T |
|
| Q |
211 |
ctttcatacaacatacatttggtggtcgtcttcaatccaaggtgtgtgtaacccttgtctcgtgattttctttagtttccttaaactttacatctttttt |
310 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29932149 |
ctttcatacaacatacttttggtggtcgtcttcaatccaaggtgtgtgtaacccttgtctcgtgattttctttagtttccttaaactttacatctttttt |
29932050 |
T |
|
| Q |
311 |
gatgtc |
316 |
Q |
| |
|
|||||| |
|
|
| T |
29932049 |
gatgtc |
29932044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University