View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_110 (Length: 331)

Name: NF10140A_low_110
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_110
NF10140A_low_110
[»] chr7 (26 HSPs)
chr7 (1-153)||(17915649-17915801)
chr7 (1-105)||(8807528-8807629)
chr7 (23-200)||(2278184-2278363)
chr7 (65-166)||(2641637-2641738)
chr7 (35-142)||(19842387-19842494)
chr7 (5-151)||(20053297-20053443)
chr7 (235-312)||(7766826-7766903)
chr7 (235-312)||(11039472-11039549)
chr7 (83-164)||(19142741-19142822)
chr7 (83-164)||(20742140-20742221)
chr7 (235-312)||(23809963-23810040)
chr7 (241-313)||(38440732-38440804)
chr7 (237-312)||(5972746-5972821)
chr7 (35-162)||(48358027-48358153)
chr7 (233-310)||(1053363-1053440)
chr7 (235-308)||(30541766-30541839)
chr7 (35-158)||(17918776-17918898)
chr7 (234-309)||(27336711-27336786)
chr7 (155-196)||(8807490-8807531)
chr7 (235-312)||(33189159-33189236)
chr7 (235-312)||(22519476-22519553)
chr7 (241-312)||(47924755-47924826)
chr7 (236-310)||(2944355-2944429)
chr7 (247-293)||(15954928-15954974)
chr7 (59-159)||(10983675-10983775)
chr7 (249-297)||(31457128-31457176)
[»] chr3 (14 HSPs)
chr3 (22-144)||(21318525-21318647)
chr3 (235-312)||(13825674-13825751)
chr3 (23-166)||(13177777-13177920)
chr3 (23-166)||(13340677-13340820)
chr3 (237-312)||(21287881-21287956)
chr3 (234-312)||(12148798-12148876)
chr3 (40-166)||(15331249-15331374)
chr3 (232-312)||(4127766-4127846)
chr3 (235-312)||(25874992-25875069)
chr3 (245-312)||(5294986-5295053)
chr3 (254-312)||(36584162-36584220)
chr3 (236-312)||(27926909-27926985)
chr3 (110-166)||(9323659-9323715)
chr3 (232-312)||(48251929-48252009)
[»] chr6 (14 HSPs)
chr6 (58-166)||(19731547-19731655)
chr6 (235-313)||(5999307-5999385)
chr6 (233-312)||(10409217-10409296)
chr6 (235-312)||(7622130-7622207)
chr6 (23-172)||(14201350-14201491)
chr6 (235-312)||(32292666-32292743)
chr6 (235-312)||(8576516-8576593)
chr6 (235-312)||(34435084-34435161)
chr6 (93-157)||(10482168-10482232)
chr6 (88-166)||(17209072-17209150)
chr6 (34-88)||(21686950-21687004)
chr6 (235-312)||(28581914-28581991)
chr6 (34-162)||(239786-239912)
chr6 (235-312)||(10788336-10788415)
[»] chr2 (15 HSPs)
chr2 (23-196)||(8685682-8685857)
chr2 (5-158)||(16197361-16197514)
chr2 (236-312)||(45151508-45151584)
chr2 (235-312)||(13807338-13807415)
chr2 (35-129)||(24216080-24216174)
chr2 (1-107)||(25348192-25348298)
chr2 (235-312)||(13626582-13626659)
chr2 (34-162)||(22132173-22132299)
chr2 (56-196)||(16152157-16152299)
chr2 (34-164)||(26653075-26653204)
chr2 (234-312)||(42625299-42625376)
chr2 (235-312)||(5938501-5938578)
chr2 (236-297)||(31604613-31604674)
chr2 (237-312)||(5109974-5110048)
chr2 (235-283)||(5704398-5704446)
[»] chr1 (16 HSPs)
chr1 (11-161)||(9756439-9756590)
chr1 (235-312)||(29678603-29678680)
chr1 (234-312)||(25294208-25294286)
chr1 (235-312)||(47140554-47140631)
chr1 (235-312)||(48379375-48379452)
chr1 (34-162)||(24006169-24006296)
chr1 (254-312)||(19884710-19884768)
chr1 (235-297)||(25987171-25987233)
chr1 (236-312)||(31585516-31585592)
chr1 (235-309)||(2192071-2192145)
chr1 (236-313)||(31293040-31293117)
chr1 (235-312)||(38264606-38264683)
chr1 (236-312)||(17563069-17563145)
chr1 (235-303)||(36729036-36729104)
chr1 (236-303)||(11894077-11894144)
chr1 (34-159)||(19223669-19223792)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-164)||(2654-2818)
[»] chr4 (17 HSPs)
chr4 (38-166)||(22316639-22316767)
chr4 (7-166)||(5842711-5842871)
chr4 (233-312)||(51356948-51357027)
chr4 (254-312)||(23626621-23626679)
chr4 (235-312)||(41039099-41039176)
chr4 (236-312)||(22278076-22278152)
chr4 (236-307)||(19841513-19841584)
chr4 (235-312)||(8819586-8819663)
chr4 (235-304)||(36465098-36465167)
chr4 (236-312)||(42555097-42555171)
chr4 (257-312)||(24912932-24912987)
chr4 (257-312)||(24916616-24916671)
chr4 (34-144)||(16322148-16322257)
chr4 (234-312)||(40572178-40572254)
chr4 (254-312)||(38951387-38951445)
chr4 (254-312)||(40715150-40715208)
chr4 (232-292)||(17120565-17120625)
[»] chr8 (13 HSPs)
chr8 (5-196)||(23432822-23433017)
chr8 (21-166)||(5826356-5826501)
chr8 (235-312)||(7987511-7987588)
chr8 (1-166)||(5828955-5829126)
chr8 (235-306)||(7968719-7968790)
chr8 (237-312)||(31005782-31005857)
chr8 (23-121)||(18565905-18566003)
chr8 (234-312)||(8227512-8227590)
chr8 (235-312)||(11481199-11481276)
chr8 (34-162)||(13645324-13645450)
chr8 (34-162)||(13745749-13745875)
chr8 (235-294)||(9765287-9765346)
chr8 (235-312)||(36583174-36583251)
[»] chr5 (11 HSPs)
chr5 (11-164)||(21216327-21216481)
chr5 (235-312)||(35188881-35188958)
chr5 (235-313)||(42836747-42836825)
chr5 (235-312)||(3925977-3926054)
chr5 (234-312)||(39800688-39800766)
chr5 (3-152)||(24885122-24885271)
chr5 (235-312)||(39207383-39207460)
chr5 (234-312)||(40056749-40056827)
chr5 (32-155)||(9824308-9824430)
chr5 (235-312)||(23429000-23429077)
chr5 (34-121)||(21391183-21391270)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-166)||(129068-129211)
[»] scaffold0691 (1 HSPs)
scaffold0691 (234-312)||(7683-7761)
[»] scaffold0115 (1 HSPs)
scaffold0115 (234-312)||(21830-21908)
[»] scaffold0300 (2 HSPs)
scaffold0300 (21-133)||(7454-7566)
scaffold0300 (27-73)||(12232-12278)
[»] scaffold0041 (1 HSPs)
scaffold0041 (59-162)||(26515-26618)
[»] scaffold0711 (1 HSPs)
scaffold0711 (59-166)||(1568-1677)
[»] scaffold0155 (1 HSPs)
scaffold0155 (234-312)||(7161-7238)
[»] scaffold0057 (1 HSPs)
scaffold0057 (236-309)||(66366-66439)
[»] scaffold0527 (2 HSPs)
scaffold0527 (34-129)||(397-492)
scaffold0527 (34-129)||(8460-8555)
[»] scaffold0032 (1 HSPs)
scaffold0032 (35-129)||(79415-79509)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 17915801 - 17915649
Alignment:
Q  1 tcagacacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgata 100  Q
    ||||||||| ||||||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  17915801 tcagacacataatctgactagctacttggatcttagggacccagaatccacgtaagcttttgtcttattctgtgagctgtctctgccatagtatctgata 17915702  T
Q  101 gagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatc 153  Q
    ||| |||| |||||||||||||||||||||||| ||||  |||| ||||||||    
T  17915701 gagtagtgcttttgtcttcttctgtctacatgtacaacacgacaaaggacatc 17915649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8807629 - 8807528
Alignment:
Q  1 tcagacacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgata 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||| |||||||||    
T  8807629 tcagacacaaaatctgactggctacttggatcagagggacccagaatccatgt---cttttgtcttattctgtgagctgtctctatcataatatctgata 8807533  T
Q  101 gagaa 105  Q
    |||||    
T  8807532 gagaa 8807528  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 2278363 - 2278184
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    ||||||||||  ||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||||||| ||||| |  | | ||||||||||||||    
T  2278363 tacttggatccaagggacccagaatccacataagcttttgtcttattttgtgagctaactctatcatagtatatgataaatcaattattttgtcttcttc 2278264  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagaga--gaaacacatcattcttattttagcaaaggacttt 200  Q
    ||||||| | |||||||| ||| ||||| |||||||||||||||  | |||| || |||||  ||| |||||||||||||    
T  2278263 tgtctacgtttgcaaccaaacaaaggacctcaagaacaaagagaatgcaacaaataattctattttcagcaaaggacttt 2278184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 2641637 - 2641738
Alignment:
Q  65 ttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaaga 164  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||| ||  |||||||||||||| |||||||||||||||||||    
T  2641637 ttattctgtgagctatctctatcatagtatctgatagagcagttcttttgtcttcttctgtttatgtgtgcaaccagacaaaggacatcaagaacaaaga 2641736  T
Q  165 ga 166  Q
    ||    
T  2641737 ga 2641738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 19842387 - 19842494
Alignment:
Q  35 agggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtg 134  Q
    ||||| ||||||||||  ||||||||||| |||||||||||  | | |||||||||||||||||||||| |||  |||||||||||||||||||| |||     
T  19842387 agggagccagaatccacataagcttttgttttattctgtgaattgtgtctatcatagtatctgatagagcagttcttttgtcttcttctgtctacgtgta 19842486  T
Q  135 caaccaga 142  Q
    ||||||||    
T  19842487 caaccaga 19842494  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 20053443 - 20053297
Alignment:
Q  5 acacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagaga 104  Q
    ||||||||| ||||| ||||||||||||  ||||||||| ||||||  |||||| || | ||||| |||||| |||||||||||||| |||||||| ||     
T  20053443 acacaaaatttgactggctacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagc 20053344  T
Q  105 agtgattttgtcttcttctgtctacatgtgcaaccagacagaggaca 151  Q
    |||  |||||||||||||  |  || ||| |||||||||| ||||||    
T  20053343 agttcttttgtcttcttccataaacgtgttcaaccagacaaaggaca 20053297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 7766903 - 7766826
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||   ||||||||||||| ||||||||| ||||    
T  7766903 ggatatggataagatacatatttcatatttatccaacggagcggacatgaatatcacactatccgcatccatgtatat 7766826  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 11039472 - 11039549
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||| | |||| |||||||||||||||||||||| ||||||  |||||| | |||||||||||||||||||    
T  11039472 ggatatggatatggtacaaatttcatatttatccaacggagtggacacggatatcatattatctgcatccatggatat 11039549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 19142741 - 19142822
Alignment:
Q  83 ctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaaga 164  Q
    |||| ||||||||||||| || |||  |||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||    
T  19142741 ctataatagtatctgataaagtagttcttttgtcttcttctgtctacgtgtgcaaacagacaaaggacctcaagaacaaaga 19142822  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 20742140 - 20742221
Alignment:
Q  83 ctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaaga 164  Q
    |||| ||||||||||||| || |||  |||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||    
T  20742140 ctataatagtatctgataaagtagttcttttgtcttcttctgtctacgtgtgcaaacagacaaaggacctcaagaacaaaga 20742221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 23809963 - 23810040
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||| ||| ||||||||||||||| ||||||| ||||||  ||||| ||||||| ||||||||||||||    
T  23809963 ggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcgcactatccgcatccatggatat 23810040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 38440732 - 38440804
Alignment:
Q  241 ggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatatt 313  Q
    ||||| |||||  ||||||||||||||||||| |||||||||  ||||||||||||| |||||||||||||||    
T  38440732 ggatatgatacgaatttcatatttatccaacgaagcggacacgaatatcacactatccgcatccatggatatt 38440804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 5972821 - 5972746
Alignment:
Q  237 atatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||| ||| ||||||||||||||| |||||||| |||||  ||||||||||||| |||| |||||||||    
T  5972821 atatggatagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcattcatggatat 5972746  T

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Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 48358027 - 48358153
Alignment:
Q  35 agggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtg 134  Q
    ||||||||||||||||| ||  |||| ||||||||||| ||  |||| |||||||||||| |||||||  | |  |||||||||||||||||||| ||||    
T  48358027 agggacccagaatccatatatacttt-gtcttattctgggaattatccctatcatagtatgtgatagaacaattcttttgtcttcttctgtctacgtgtg 48358125  T
Q  135 caaccagacagaggacatcaagaacaaa 162  Q
    ||| || ||| ||||| |||| ||||||    
T  48358126 caaacatacaaaggacctcaataacaaa 48358153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 1053363 - 1053440
Alignment:
Q  233 gtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||| ||| |  ||||||||||||||| || || |||||||||||  ||||||||||||||||||||||||||    
T  1053363 gtggatatgaataaggcacagatttcatatttgtctaatggagcggacacggatatcacactatctgcatccatggat 1053440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 30541766 - 30541839
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatgg 308  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| ||  |||||| |||||| ||||||||||    
T  30541766 ggatatggatagggtacggatttcatattaatccaacggagcggatacgaatatcatactatccgcatccatgg 30541839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 17918898 - 17918776
Alignment:
Q  35 agggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtg 134  Q
    ||||||||||||||||  |||||||| |||||||  |||||  | || ||||||||||||| ||||||| | |  |||| ||||||||||||||| ||||    
T  17918898 agggacccagaatccacataagcttt-gtcttatcatgtgaattgtccctatcatagtatccgatagagcatttcttttatcttcttctgtctacgtgtg 17918800  T
Q  135 caaccagacagaggacatcaagaa 158  Q
    ||| |||||| | ||| |||||||    
T  17918799 caaacagacaaatgacctcaagaa 17918776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 27336786 - 27336711
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatgga 309  Q
    |||||||||||||| |   ||||||||||||||| |||| || ||||||  |||||||||||||||||||||||||    
T  27336786 tggatatggatagggtctggatttcatatttatctaacgaagtggacacggatatcacactatctgcatccatgga 27336711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 8807531 - 8807490
Alignment:
Q  155 agaacaaagagagaaacacatcattcttattttagcaaagga 196  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  8807531 agaacaaagagagagacacatcattcttattttagcaaagga 8807490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 33189236 - 33189159
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||| ||||||  ||| |||||||||||||| ||||||| ||||||  |||||| ||||||||||||||| |||||    
T  33189236 ggatattgatagggcacatatttcatatttatcaaacggagtggacacggatatcaaactatctgcatccatagatat 33189159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 22519476 - 22519553
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||| ||||||| ||| ||||||||| ||||||||| |||| |||| | |||| |||||||| | ||||||||||||    
T  22519476 ggatacggatagggtacggatttcataattatccaaccgagcagacaaaaatattacactatccgtatccatggatat 22519553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 47924826 - 47924755
Alignment:
Q  241 ggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||| ||| |||||||||||||||||| | | ||||||| ||||| | ||||||| |||||||| ||||    
T  47924826 ggatagggtacggatttcatatttatccaatgaaacggacacgtatattagactatctacatccatgaatat 47924755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 2944355 - 2944429
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||| ||||| ||||| ||||||| |||| |||| ||||||||||  ||||||||| |||  |||||||||||    
T  2944355 gatatgaatagggtacagttttcatacttatacaacagagcggacacggatatcacaccatccacatccatggat 2944429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 15954928 - 15954974
Alignment:
Q  247 gatacagatttcatatttatccaacggagcggacacatatatcacac 293  Q
    |||||| |||| |||||||||||||||| |||||||| |||||||||    
T  15954928 gatacaaattttatatttatccaacggaacggacacagatatcacac 15954974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 10983675 - 10983775
Alignment:
Q  59 tttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaa 158  Q
    ||||| |||||||| || || |||||||||||  ||||| ||||  | |  || |||||||| |||||||| ||| |||||| ||| |||||||||||||    
T  10983675 tttgttttattctgcgaactgtctctatcataacatctggtagaacaattcttctgtcttctactgtctacgtgtacaaccacacaaaggacatcaagaa 10983774  T
Q  159 c 159  Q
    |    
T  10983775 c 10983775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 31457176 - 31457128
Alignment:
Q  249 tacagatttcatatttatccaacggagcggacacatatatcacactatc 297  Q
    |||| ||||||||||||||||||  | |||||||| |||||||||||||    
T  31457176 tacatatttcatatttatccaacaaaacggacacaaatatcacactatc 31457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 21318647 - 21318525
Alignment:
Q  22 ctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttctt 121  Q
    |||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  21318647 ctacttggattagaggaacctagaatccacgtaagcttttgtcttattctgtgagttatctctatcatagtatctgatagagtagtgcttttgtcttctt 21318548  T
Q  122 ctgtctacatgtgcaaccagaca 144  Q
    |||||||| ||||||||||||||    
T  21318547 ctgtctacgtgtgcaaccagaca 21318525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 13825751 - 13825674
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  13825751 ggatatggatagggtacggatttcatatttatctaacggagcggacacatatatcacactatccgcatccatggatat 13825674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 13177777 - 13177920
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    |||||||||| |||||||||  ||| || ||||  |||||||| || ||||||||| ||| || | |||||| |||||||| |||  |||||||||||||    
T  13177777 tacttggatctgagggacccgaaatgcacgtaaatttttgtctaatactgtgagctgtctataccgtagtatttgatagaggagttcttttgtcttcttc 13177876  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||||||| |||||||| ||||| | ||| |||||||||||||||    
T  13177877 tgtctacgtgtgcaactagacaaatgacctcaagaacaaagaga 13177920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 13340677 - 13340820
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    |||||||||| |||||||||  ||| || ||||  |||||||| ||  |||||||| ||| || | ||||||||||||||| |||  |||||||||||||    
T  13340677 tacttggatctgagggacccgaaatgcaggtaaatttttgtctaatattgtgagctgtctataccgtagtatctgatagaggagttcttttgtcttcttc 13340776  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||||||| |||||||| ||||| ||||| | |||||||||||||    
T  13340777 tgtctacgtgtgcaactagacaaaggaccttaagaacaaagaga 13340820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 21287956 - 21287881
Alignment:
Q  237 atatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||| ||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||    
T  21287956 atatggatagggtacggatttcatatttatctaacggaggggacacagatatcacactatctgcatccatggatat 21287881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 12148876 - 12148798
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||| ||| ||||||||||||||| ||||||| ||||||  ||||||||||||| ||||||||||||||    
T  12148876 tggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 12148798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 15331249 - 15331374
Alignment:
Q  40 cccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaacc 139  Q
    ||||||||||| ||||| |||||| || || |||||  | || ||||||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||| |    
T  15331249 cccagaatccacgtaag-ttttgttttgttttgtgaattgtccctatcattgtatctgatagagcagttattttctcttcttttgtctacatgtgcaaac 15331347  T
Q  140 agacagaggacatcaagaacaaagaga 166  Q
    | ||| ||||| |||||||||||||||    
T  15331348 aaacaaaggacctcaagaacaaagaga 15331374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 4127846 - 4127766
Alignment:
Q  232 cgtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||| ||||||||||| | | |||||||||||||||||||||| |||||||  ||||||||||||| ||||||||||||||    
T  4127846 cgtgaatatggatagggttcggatttcatatttatccaacggaacggacacggatatcacactatccgcatccatggatat 4127766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 25874992 - 25875069
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||| ||| |||||||| |||||| ||||||||||||||  |||||||||||||  |||||||| ||||    
T  25874992 ggatatggatagggtacggatttcatctttatctaacggagcggacacggatatcacactatccacatccatgtatat 25875069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 5295053 - 5294986
Alignment:
Q  245 aggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||| |||||||||||||||| ||||||| ||||||  ||||||||||||| ||||||||| ||||    
T  5295053 aggatatagatttcatatttatctaacggaggggacacggatatcacactatccgcatccatgaatat 5294986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 36584220 - 36584162
Alignment:
Q  254 atttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||||||| ||||| || ||| |||||| |||||||||||||||||||||    
T  36584220 atttcatatttatccaatggagcagatacagatatcatactatctgcatccatggatat 36584162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 27926909 - 27926985
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||| |||||  |||| |||||||||||||| ||||||||||||||  |||| ||||||||| |||||||| ||||    
T  27926909 gatatagatagagtacatatttcatatttatctaacggagcggacacggatatgacactatctacatccatgaatat 27926985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 9323715 - 9323659
Alignment:
Q  110 ttttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    |||||||||||||||||||| ||||||| || ||| | ||| |||||||||||||||    
T  9323715 ttttgtcttcttctgtctacgtgtgcaaacaaacaaatgacctcaagaacaaagaga 9323659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 48251929 - 48252009
Alignment:
Q  232 cgtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||| |||||| |||  ||||||||||||||||||||| |||| |   |||||||||||||  ||| |||||||||    
T  48251929 cgtggatatcgatagggtacgaatttcatatttatccaacggaacggatatggatatcacactatccacattcatggatat 48252009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 19731655 - 19731547
Alignment:
Q  58 ttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaaga 157  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  19731655 ttttgtctcattctgtgagctatctctatcatagtatctgatagagcagttattttgtcttcttctgtctacgtgtgcaaccagacaaaggacatcaaga 19731556  T
Q  158 acaaagaga 166  Q
    |||||||||    
T  19731555 acaaagaga 19731547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 5999385 - 5999307
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatatt 313  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||  ||||||||||||| |||||||||||||||    
T  5999385 ggatatggatagggtacggatttcatatttatctaacggagcggacacggatatcacactatccgcatccatggatatt 5999307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 10409217 - 10409296
Alignment:
Q  233 gtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||||||||||  |||||||| ||||    
T  10409217 gtggatatggatagggtacggattttatatttatccaacggagcgaacacatatatcacactatcatcatccatgaatat 10409296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 7622207 - 7622130
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||| | |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||  |||||||    
T  7622207 ggatatggataaggtacagatttcatatttattcaacggaacggacacagatatcacactatctgcatctgtggatat 7622130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 14201491 - 14201350
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    ||||| |||| ||||||| || ||| || ||||||||||||| ||||||||||  | |||||||||| |||||||||||||        |||||||||||    
T  14201491 tactttgatctgagggactcataattcacgtaagcttttgtcatattctgtgatatgtctctatcatggtatctgatagag--------ttgtcttcttc 14201400  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagagagaaaca 172  Q
    ||||||| ||| | |||||||| ||||||||| |||| ||||||| ||||    
T  14201399 tgtctacgtgtactaccagacaaaggacatcaggaacgaagagagcaaca 14201350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 32292666 - 32292743
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||||  |||||| |||||| |||||||| |||||    
T  32292666 ggatatggatagggtatggatttcatatttatccaacggagcggacacggatatcatactatccgcatccatcgatat 32292743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 8576593 - 8576516
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||  ||| ||||||||||||||  |||||| |||||||  ||||||||||||| ||||||||||||||    
T  8576593 ggatatggatagagtacggatttcatatttatttaacggaacggacacggatatcacactatccgcatccatggatat 8576516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 34435084 - 34435161
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||| |||||| || |||||||||||||||| || |||||||| ||  ||||||||||||| ||||||||| ||||    
T  34435084 ggatatagatagggtagagatttcatatttatctaatggagcggatacggatatcacactatccgcatccatgaatat 34435161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 10482232 - 10482168
Alignment:
Q  93 atctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaaga 157  Q
    ||||||||||| ||| ||||| ||||||||||||||| ||||||| |||||| ||||| ||||||    
T  10482232 atctgatagagcagttattttatcttcttctgtctacgtgtgcaaacagacaaaggacctcaaga 10482168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 17209150 - 17209072
Alignment:
Q  88 atagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||||||||| ||||||||||  |||||||||||||| ||||| | ||||| |||||| || || |||||||||| ||||    
T  17209150 atagtatctaatagagaagttcttttgtcttcttctatctacgtctgcaaacagacaaagcacctcaagaacaatgaga 17209072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 21686950 - 21687004
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatca 88  Q
    |||||||||| |||||| ||| ||||||||||||||||||||||| |||| ||||    
T  21686950 gagggacccaaaatccacgtatgcttttgtcttattctgtgagctgtctcaatca 21687004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 28581991 - 28581914
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||| ||||| ||  ||||||||||||||| |||||||| ||||   |||||||||||||  |||||||||||||    
T  28581991 ggatatgaatagggtatggatttcatatttatctaacggagcagacatggatatcacactatccacatccatggatat 28581914  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 239786 - 239912
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    ||||||||||||||||| ||| | |||||| || || ||||| || || |||||| || ||||| ||||| | |  |||||||||||||||||||| |||    
T  239786 gagggacccagaatccacgta-gattttgtattcttttgtgaactgtccctatcaaaggatctgctagaggaatttttttgtcttcttctgtctacgtgt 239884  T
Q  134 gcaaccagacagaggacatcaagaacaaa 162  Q
    ||||  ||||| ||||| |||||| ||||    
T  239885 gcaaatagaca-aggacctcaagagcaaa 239912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 10788415 - 10788336
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacaca--tatatcacactatctgcatccatggatat 312  Q
    ||||||||||||| ||  |||||||| |||||| |||||||||||||||   ||||||||||||| |||| |||| ||||    
T  10788415 ggatatggatagggtatggatttcatgtttatctaacggagcggacacacggatatcacactatccgcatacatgaatat 10788336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 8685857 - 8685682
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    |||||||||  ||||||||  ||||| | |||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||  ||||||||| |||    
T  8685857 tacttggatatgagggaccaggaatctacgtaagcttttgtcttattatgtgagttttctctatcatagtatctaatagagaagtttttttgtcttattc 8685758  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagaga--gaaacacatcattcttattttagcaaagga 196  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||  | |||| || |||||| |||||||||||||    
T  8685757 tgtctacatgtgcaaacagacaaaggacctcaagaacaaagagaatgtaacaaataattcttcttttagcaaagga 8685682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 16197361 - 16197514
Alignment:
Q  5 acacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagaga 104  Q
    ||||| ||||||||| | |||||||||| ||||||| || ||||||||||| ||||| ||||||| |||| | | || |||||||| ||||||||||||     
T  16197361 acacagaatctgactgggtacttggatctgagggactcataatccatgtaaacttttatcttattttgtgtgttgtcactatcataatatctgatagagc 16197460  T
Q  105 agtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaa 158  Q
    |||  |||||||| ||||||||||| | | |||| ||||| |||||||||||||    
T  16197461 agttcttttgtctccttctgtctacgtatacaactagacaaaggacatcaagaa 16197514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 45151508 - 45151584
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||||||  ||||||||||||| |||| |||||||||    
T  45151508 gatatgaataggatacagatttcatatttatctaacagagcggacacggatatcacactatccgcatgcatggatat 45151584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 13807415 - 13807338
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||||||| |||||||||||| || ||||  ||||||||| ||||||||||||| || |||||||||||    
T  13807415 ggatatggataggatacggatttcatatttttctaacgaggcggacacagatatcacactatccgcgtccatggatat 13807338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 24216174 - 24216080
Alignment:
Q  35 agggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctac 129  Q
    |||||||||||||||| |||||||||||||||||||| |||| | |||||||||  | |||| | |||| |   |||||||||||||||||||||    
T  24216174 agggacccagaatccacgtaagcttttgtcttattctatgagttgtctctatcagtgcatctaacagagcaactattttgtcttcttctgtctac 24216080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 25348298 - 25348192
Alignment:
Q  1 tcagacacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgata 100  Q
    |||||| |||||| ||||  | || |||||||  ||||||| |||||||| ||||| |||||| |||||||||||| | |||||||||||| ||||| ||    
T  25348298 tcagacgcaaaatttgacaggataattggatctcagggacctagaatccacgtaagattttgtgttattctgtgagttgtctctatcatagcatctggta 25348199  T
Q  101 gagaagt 107  Q
    |||||||    
T  25348198 gagaagt 25348192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 13626582 - 13626659
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||| ||| ||||||||||||||| |||| | |||||||  ||||||||||||| ||||| ||||||||    
T  13626582 ggatatggatagggtacggatttcatatttatctaacgaaacggacacgaatatcacactatccgcatctatggatat 13626659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 22132173 - 22132299
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    ||||||||||||||||| ||| | |||| |||| ||  |||| || || |||||| || || |||||||| |||  |||||||||||||||||||| |||    
T  22132173 gagggacccagaatccacgtaggttttt-tcttctttagtgaactgtccctatcaaaggatatgatagagcagtt-ttttgtcttcttctgtctacgtgt 22132270  T
Q  134 gcaaccagacagaggacatcaagaacaaa 162  Q
    |||| |||||| ||||| |||||||||||    
T  22132271 gcaaacagacaaaggacctcaagaacaaa 22132299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 16152157 - 16152299
Alignment:
Q  56 gcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaa 155  Q
    |||||||||||||||| |||  | |||||||||||||||||||||||| |||  |||||| | ||||| ||||   ||| ||||||||| | ||| ||||    
T  16152157 gcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgcgtgaaaccagacataagacttcaa 16152256  T
Q  156 gaacaaagaga--gaaacacatcattcttattttagcaaagga 196  Q
    ||||||| |||  | |||| || |||||| ||| |||||||||    
T  16152257 gaacaaaaagaatgcaacatataattcttctttcagcaaagga 16152299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 26653075 - 26653204
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    |||||||||| |||||||||| | |||| |||| || || |  || |||||||||| ||||| ||||||| |||  || || |||||||||||||| |||    
T  26653075 gagggacccaaaatccatgta-gattttttcttcttatgggcactgtctctatcatcgtatcagatagagcagttcttatgccttcttctgtctacgtgt 26653173  T
Q  134 gcaaccagacagaggacatcaagaacaaaga 164  Q
    |||| || ||| ||||| |||||||||||||    
T  26653174 gcaaacaaacaaaggacctcaagaacaaaga 26653204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 42625299 - 42625376
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||| ||| ||||||||||||||| ||| ||| ||||||  |||||||||| || ||||||||||||||    
T  42625299 tggatatggatagggtacggatttcatatttatctaac-gagtggacacggatatcacactctccgcatccatggatat 42625376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 5938578 - 5938501
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||| |||  |||||||||||||| ||||||| ||||||  ||||||||||||   |||||||||||||    
T  5938578 ggatatggatagggtacgaatttcatatttatctaacggagtggacacggatatcacactattcacatccatggatat 5938501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 31604674 - 31604613
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatc 297  Q
    ||||| |||| | |||| ||||||||||||||||||||||| |||||| |||||||||||||    
T  31604674 gatatagataaggtacaaatttcatatttatccaacggagcagacacaaatatcacactatc 31604613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 5110048 - 5109974
Alignment:
Q  237 atatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||| |||| |||||||||||||||  || ||||| ||||| ||||||||||||| |||| |||||||||    
T  5110048 atatggatagaatacggatttcatatttatctgacagagcgcacacaaatatcacactatccgcat-catggatat 5109974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 5704446 - 5704398
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacaca 283  Q
    |||||| |||||  ||||||||||||||||||| || ||||||||||||    
T  5704446 ggatatagatagagtacagatttcatatttatctaatggagcggacaca 5704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 9756439 - 9756590
Alignment:
Q  11 aatctgacttg-ctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtga 109  Q
    ||||||||||| ||||||||||  |||||||||||| |||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |    
T  9756439 aatctgacttggctacttggatacgagggacccagattccacgtaagcttttgtcttattctgtgagttgtctctataatagtatctgatagagaagtta 9756538  T
Q  110 ttttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaa 161  Q
    ||||||||| |||||||||  ||| ||| ||||||  |||||||||||||||    
T  9756539 ttttgtctttttctgtctatgtgtacaaacagacaacggacatcaagaacaa 9756590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 29678603 - 29678680
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  29678603 ggatatggatagggtatggatttcatatttatccaacggagcggacacatatatcatactatctgcatcaatggatat 29678680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 25294208 - 25294286
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||||  ||||||||||||| ||||||||||||||    
T  25294208 tggatatggatagggtacagatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 25294286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 47140631 - 47140554
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||| |||| ||||  ||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  47140631 ggatatagataagatatggatttcatatttatccaacggagcggacacgaatatcacactatccgcatccatggatat 47140554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 48379375 - 48379452
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||| | ||| ||||||||||||||| ||||||||||||||  || |||||||||| ||||||||||||||    
T  48379375 ggatatggatatggtacggatttcatatttatctaacggagcggacacggatttcacactatccgcatccatggatat 48379452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 24006169 - 24006296
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    |||||||||||||||||| || | ||||  ||| || ||||| | || |||||||||||||||||||||| ||| ||||||||||||| ||||||| |||    
T  24006169 gagggacccagaatccatataggtttttc-cttcttatgtgaaccatatctatcatagtatctgatagagcagttattttgtcttcttatgtctacgtgt 24006267  T
Q  134 gcaaccagacagaggacatcaagaacaaa 162  Q
      ||  ||||| ||||| |||||||||||    
T  24006268 cgaaaaagacaaaggacctcaagaacaaa 24006296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 19884710 - 19884768
Alignment:
Q  254 atttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  19884710 atttcatatttgtccaacggagcggacacagatatcacactatccgcatccatgaatat 19884768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 25987233 - 25987171
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatc 297  Q
    ||||||||||| |||||| |||||||| ||||| |||||||||||||| ||||||||||||||    
T  25987233 ggatatggataagatacatatttcatacttatctaacggagcggacacgtatatcacactatc 25987171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 31585516 - 31585592
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||| ||| ||||| ||||||||| |||||||||||||   |||| |||||||| ||||||||||||||    
T  31585516 gatatggatagggtacggattttatatttatctaacggagcggacaaggatattacactatccgcatccatggatat 31585592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 2192071 - 2192145
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatgga 309  Q
    |||||||||||||| | ||||||||||||| || || |||||||||||  |||||||| |||| |||||||||||    
T  2192071 ggatatggataggacatagatttcatatttgtctaatggagcggacacggatatcacattatccgcatccatgga 2192145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 31293040 - 31293117
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatatt 313  Q
    |||||||||||| | | ||||||||||||||| ||||||||||| | | |||||||| |||| |||||||| ||||||    
T  31293040 gatatggataggctgcggatttcatatttatctaacggagcggatataaatatcacattatccgcatccatagatatt 31293117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 38264606 - 38264683
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||  || |||||||||||| || |||||| ||||||||||||||||| |||| | ||||||| ||||    
T  38264606 ggatatggatagggcacggatttcatatttgtctaacggaacggacacatatatcacagtatccgtatccatgaatat 38264683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 17563069 - 17563145
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||| ||  ||||| ||||||||| ||| ||||||||| | |||| |||||||| ||||||||||||||    
T  17563069 gatatggatagggtatggattttatatttatctaacagagcggacaaagatattacactatccgcatccatggatat 17563145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 36729036 - 36729104
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatc 303  Q
    |||||| |||||| |||  ||||||||||||||||||||| |||||||  ||||||||||||| |||||    
T  36729036 ggatattgatagggtacgaatttcatatttatccaacggatcggacacggatatcacactatccgcatc 36729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 11894144 - 11894077
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatc 303  Q
    |||||| ||| | |||||||||||||||||||||| ||| | |||||| |||| |||||||| |||||    
T  11894144 gatatgaatatggtacagatttcatatttatccaatggaacagacacaaatattacactatccgcatc 11894077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 19223669 - 19223792
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    |||||||| |||||||| ||||||||  ||||||||||||||| | | || ||||  | ||||||||||| | |  ||||||||||||| |||||| |||    
T  19223669 gagggacctagaatccacgtaagctt--gtcttattctgtgagttttgtcaatcagtgcatctgatagagcaattcttttgtcttcttccgtctacgtgt 19223766  T
Q  134 gcaaccagacagaggacatcaagaac 159  Q
     | ||  |||| ||||||||| ||||    
T  19223767 acgacaggacaaaggacatcaggaac 19223792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 2818 - 2654
Alignment:
Q  1 tcagacacaaaatctgacttgc-tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgat 99  Q
    ||||||| | |||||||||||| |||||||||  |||||||||| ||| ||  |||||||||||||||| ||||||| | ||||||||||||||||||||    
T  2818 tcagacatagaatctgacttgcatacttggatatgagggacccataattcacataagcttttgtcttatactgtgagttgtctctatcatagtatctgat 2719  T
Q  100 agagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaaga 164  Q
    |||| |||  |||||||||||||||||||  |||||||| ||| | |||||||||||||||||||    
T  2718 agagtagttcttttgtcttcttctgtctatgtgtgcaacaagaaaaaggacatcaagaacaaaga 2654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 22316639 - 22316767
Alignment:
Q  38 gacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaa 137  Q
    ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| ||||||||| |||  |||||||||||||| | ||| |||||||    
T  22316639 gacccagaatccacgtaagcttttgtcttattctgtgagttgtctctatcatagtaactgatagagcagttcttttgtcttcttctatgtacgtgtgcaa 22316738  T
Q  138 ccagacagaggacatcaagaacaaagaga 166  Q
    ||||||| | ||| |||||||||||||||    
T  22316739 ccagacaaaagacctcaagaacaaagaga 22316767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 5842711 - 5842871
Alignment:
Q  7 acaaaatctgacttgc-tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaa 105  Q
    ||||||||||||| || |||||| ||| || |||||||||||| |  ||| ||||| ||||||| |||||| | |||||||||||||||||||||||| |    
T  5842711 acaaaatctgactggcatacttgaatctgaaggacccagaatctacataatcttttatcttattatgtgagttgtctctatcatagtatctgatagagca 5842810  T
Q  106 gtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||  |||||||||||| ||||||| |||||||||| | | ||||||| |||||||||||||    
T  5842811 gttcttttgtcttcttatgtctacgtgtgcaaccaaataaaggacattaagaacaaagaga 5842871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 51357027 - 51356948
Alignment:
Q  233 gtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||||  ||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  51357027 gtggatatggatagggcacaaatttcatatttgtccaacggagcggacacagatatcacactatccgcatccatggatat 51356948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 23626679 - 23626621
Alignment:
Q  254 atttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||    
T  23626679 atttcatatttatccgacggagcggacacaaatatcacactatttgcatccatggatat 23626621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 41039176 - 41039099
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||| | ||| ||||||||||||||| ||||||||||||||  |||||||| |||| ||||||||||||||    
T  41039176 ggatatggatatggtacggatttcatatttatctaacggagcggacacggatatcacattatccgcatccatggatat 41039099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 22278152 - 22278076
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||| |||||| ||| |||||||||||||||||||||| |||||||  |||||| | ||||| |||||||||||||    
T  22278152 gatattgatagggtacggatttcatatttatccaacggaacggacacggatatcataatatctacatccatggatat 22278076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 19841584 - 19841513
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    ||||| |||||| ||| |||||||||||||||| || ||||||||| | ||||||||||||| |||||||||    
T  19841584 gatatcgatagggtacggatttcatatttatccgacagagcggacatagatatcacactatccgcatccatg 19841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 8819586 - 8819663
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||  ||  ||||||||||| |||||||||| |||| |  ||||||||||||| ||||||||||||||    
T  8819586 ggatatggatagggaacgaatttcatatttgtccaacggagtggacgcgaatatcacactatccgcatccatggatat 8819663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 36465098 - 36465167
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatcc 304  Q
    |||||||||||| | |  |||||||||||| |||||||||||||| ||| ||||||||||||| ||||||    
T  36465098 ggatatggatagaacattgatttcatatttgtccaacggagcggatacaaatatcacactatccgcatcc 36465167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 42555171 - 42555097
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||  |||| |||||||||||||| ||||||||||  | ||| ||||||||||| ||||||||||||||    
T  42555171 gatatggatagagtacaaatttcatatttatcaaacggagcgg--atatacatcacactatccgcatccatggatat 42555097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 24912987 - 24912932
Alignment:
Q  257 tcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||||| || |||||||||||||| ||||| ||| |||||||||||    
T  24912987 tcatatttatccaacgaagtggacacatatatcatactatatgcgtccatggatat 24912932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 24916671 - 24916616
Alignment:
Q  257 tcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||||| |||||||||  |||||| ||||||||| |||||||||||    
T  24916671 tcatatttatccaacgaagcggacacggatatcatactatctgcgtccatggatat 24916616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 16322148 - 16322257
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    ||||||||||||||||| ||| ||||| |||||||||| ||| || || ||||||||||| || ||| || |||  |||||| ||||| || |||| |||    
T  16322148 gagggacccagaatccacgtaggcttt-gtcttattctatgaactgtccctatcatagtacctaatatagcagttcttttgttttcttttgcctacgtgt 16322246  T
Q  134 gcaaccagaca 144  Q
    |||| ||||||    
T  16322247 gcaaacagaca 16322257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 40572178 - 40572254
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||| || |  ||||| ||||||| ||||||| ||||||  |||||||||||||  |||||||||||||    
T  40572178 tggatatggatagggtaaa--tttcacatttatctaacggagtggacacgaatatcacactatccacatccatggatat 40572254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 38951445 - 38951387
Alignment:
Q  254 atttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||| ||||||||| |||||| |||||||  |||||||||| || ||||||||||||||    
T  38951445 attttatatttatctaacggaacggacacgaatatcacactctccgcatccatggatat 38951387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 40715150 - 40715208
Alignment:
Q  254 atttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||| |||| ||||||| | |||||  |||||||||||||||||||| |||||||    
T  40715150 atttcatacttattcaacggatcagacacgaatatcacactatctgcatccttggatat 40715208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 17120565 - 17120625
Alignment:
Q  232 cgtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcaca 292  Q
    |||||||||| ||| | |||| ||||||||||| ||||| ||| | |||||||||||||||    
T  17120565 cgtggatatgaatatggtacaaatttcatatttgtccaatggaacagacacatatatcaca 17120625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 23432822 - 23433017
Alignment:
Q  5 acacaaaatctgacttgc-tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagag 103  Q
    ||||| ||||||||| || |||||||||| ||||||||  ||||| | ||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  23432822 acacagaatctgactggcatacttggatctgagggaccaggaatctacgtaagcttttgtcttattctgtgagttgcctctatcatagtatctgatagag 23432921  T
Q  104 aag-tgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga--gaaacacatcattcttattttagcaaagga 196  Q
     || |  ||||||||| ||||||||||||||| ||  ||||| ||||| |||||||||||||||  | |||| ||  ||||| |||||||||||||    
T  23432922 cagttttttttgtctttttctgtctacatgtgaaaatagacaaaggacctcaagaacaaagagaatgcaacagatagttcttcttttagcaaagga 23433017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 5826501 - 5826356
Alignment:
Q  21 gctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttct 120  Q
    |||||||||||| ||| ||| |||||| || ||||| |||||||||||| |||||| | |  |||||||| |||||||||||| | || ||||||||| |    
T  5826501 gctacttggatctgagagactcagaattcacgtaagattttgtcttattatgtgagttgttactatcataatatctgatagagcaatgcttttgtctttt 5826402  T
Q  121 tctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||| ||||| |||||||||||||| |||||||||||||| ||||||    
T  5826401 tctatctacgtgtgcaaccagacaaaggacatcaagaacgaagaga 5826356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 7987511 - 7987588
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  7987511 ggatatggatagggtacggatttcatatttatccaacggagcggacacagatatcacaatatctgcatccatggatat 7987588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 5829126 - 5828955
Alignment:
Q  1 tcagacacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatct------ctatcatagtat 94  Q
    ||||||||| ||| || || |||||||||||| ||| ||| |||||| || |||||||||||||||||| |||||| | |        |||||||| |||    
T  5829126 tcagacacagaatttggctagctacttggatctgagagactcagaattcacgtaagcttttgtcttattatgtgagttgtagttgttgctatcataatat 5829027  T
Q  95 ctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||||||||| | || ||||||||| |||| ||||| |||||||||||||| |||||||||||||| ||||||    
T  5829026 ctgatagagcaatgcttttgtctttttctatctacgtgtgcaaccagacaaaggacatcaagaacgaagaga 5828955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 7968719 - 7968790
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccat 306  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  7968719 ggatatggatagggtacggatttcatatttatccaacggagcggacacggatatcacactatctgcatccat 7968790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 31005857 - 31005782
Alignment:
Q  237 atatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||  || |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||    
T  31005857 atatggatagggcacggatttcatatttgtccaacggagcggacacggatatcacactatctgcatccatggatat 31005782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 18566003 - 18565905
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttctt 121  Q
    |||||||||| ||||||||||||||||| |||  ||||||||||||| ||||||   ||||||||||| ||||||||| ||||||  ||||||||||||    
T  18566003 tacttggatctgagggacccagaatccacgtagacttttgtcttattttgtgagaggtctctatcatattatctgataaagaagttcttttgtcttctt 18565905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 8227512 - 8227590
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||  ||| ||||||||||||||| ||||||||||||||  |||||||||||||  |||||||||||||    
T  8227512 tggatatggatagagtacggatttcatatttatctaacggagcggacacggatatcacactatccacatccatggatat 8227590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 11481276 - 11481199
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||||||  |||||||||||||| |  |||||||||||| ||||||||||||| ||||| ||||||||    
T  11481276 ggatatggataggatacgaatttcatatttatctattggagcggacacaaatatcacactatccgcatctatggatat 11481199  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 13645450 - 13645324
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    ||||| ||||||||||| ||| | ||| ||||| ||||||||  | || ||||||||||||||||||||| |||  ||||||||||||||||| || |||    
T  13645450 gagggtcccagaatccacgtaggattt-gtcttcttctgtgaattctccctatcatagtatctgatagagtagtt-ttttgtcttcttctgtccacgtgt 13645353  T
Q  134 gcaaccagacagaggacatcaagaacaaa 162  Q
    |||| |||||| || || |||||||||||    
T  13645352 gcaaacagacaaagaacctcaagaacaaa 13645324  T

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Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 13745875 - 13745749
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    ||||| ||||||||||| ||| | ||| ||||| ||||||||  | || ||||||||||||||||||||| |||  ||||||||||||||||| || |||    
T  13745875 gagggtcccagaatccacgtaggattt-gtcttcttctgtgaattctccctatcatagtatctgatagagtagtt-ttttgtcttcttctgtccacgtgt 13745778  T
Q  134 gcaaccagacagaggacatcaagaacaaa 162  Q
    |||| |||||| || || |||||||||||    
T  13745777 gcaaacagacaaagaacctcaagaacaaa 13745749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 9765287 - 9765346
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacact 294  Q
    ||||||||||||| ||| ||||| ||||||||| |||| |||||||||||||||||||||    
T  9765287 ggatatggatagggtacggatttaatatttatctaacgaagcggacacatatatcacact 9765346  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 36583174 - 36583251
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||| ||||| ||| ||||||||||||||| |||||| |||||||  |||||| |||||  ||||||||||||||    
T  36583174 ggatatgaatagggtacggatttcatatttatctaacggaacggacacggatatcatactatacgcatccatggatat 36583251  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 21216327 - 21216481
Alignment:
Q  11 aatctgacttgc-tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtga 109  Q
    |||||||||||| |||||||||| |||||||||| |||| | |||||| ||||||||||| | | || | | ||| |||||||||||||||||  ||| |    
T  21216327 aatctgacttgcatacttggatccgagggacccaaaatcaacgtaagcctttgtcttattttataagttgtatctgtcatagtatctgatagatcagtta 21216426  T
Q  110 ttttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaaga 164  Q
    |||||||||||||||||||  ||||||| |||||| ||||| |||||||||||||    
T  21216427 ttttgtcttcttctgtctatgtgtgcaaacagacaaaggacctcaagaacaaaga 21216481  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 35188881 - 35188958
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||||    
T  35188881 ggatatagataggatacagatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 35188958  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 42836825 - 42836747
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatatt 313  Q
    ||||||||||| | |||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||    
T  42836825 ggatatggatatggtacatatttcatatttatctaacggagcggacacagatatcacactatccgcatccatggatatt 42836747  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 3926054 - 3925977
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||| | ||| ||||||||||||||| ||||||||||||||| |||||||||||||  |||||||||||||    
T  3926054 ggatatggatatggtacggatttcatatttatctaacggagcggacacaaatatcacactatccacatccatggatat 3925977  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 39800688 - 39800766
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||| ||| ||||| ||||||||| ||||||| ||||||  ||||||||||||| ||||||||||||||    
T  39800688 tggatatggatagggtacggattttatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 39800766  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 24885122 - 24885271
Alignment:
Q  3 agacacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgataga 102  Q
    ||||||| ||||||||  |||||||| |||  ||||||| ||||||||  ||||||||||||||||| |||||| | | |||||||||| ||||  ||||    
T  24885122 agacacagaatctgacaggctacttgaatctaagggacctagaatccacataagcttttgtcttattatgtgagttttttctatcatagcatctagtaga 24885221  T
Q  103 gaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacat 152  Q
    | |||  |||||||||||| ||| ||  ||| ||||| |||| |||||||    
T  24885222 gcagttcttttgtcttcttttgtttatgtgtacaaccggacaaaggacat 24885271  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 39207383 - 39207460
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||| ||| ||| ||||||||||||||| |||||||| |||||  ||||||||||||| ||||||||||||||    
T  39207383 ggatatggaaagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcatccatggatat 39207460  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 40056827 - 40056749
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||| |||  |||||||||||||| ||||||| ||| ||  ||||||||||||| ||||||||||||||    
T  40056827 tggatatggatagggtacgaatttcatatttatctaacggagtggaaacggatatcacactatccgcatccatggatat 40056749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 9824430 - 9824308
Alignment:
Q  32 cagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacat 131  Q
    ||||||||||||||||||||||| || ||  ||||||| |||||  | || ||||| ||||||||||||||| |||  |||||||||| ||| ||||| |    
T  9824430 cagagggacccagaatccatgtaggcctta-tcttattatgtgaattgtccctatcttagtatctgatagagcagttcttttgtcttcctctctctacgt 9824332  T
Q  132 gtgcaaccagacagaggacatcaa 155  Q
     ||||| |||||| ||||| ||||    
T  9824331 atgcaaacagacaaaggacctcaa 9824308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 23429077 - 23429000
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||||||||| ||| ||||||||||||||| | |||||| ||||   ||||||||||||| ||||||||| ||||    
T  23429077 ggatatggatagggtacggatttcatatttatctatcggagcagacaaggatatcacactatccgcatccatgaatat 23429000  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 21391183 - 21391270
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttctt 121  Q
    |||||||||  ||||||||||| |||||||||||||||||||| | |||||||||    ||||| ||||| | | |||||||||||||    
T  21391183 gagggacccgtaatccatgtaaacttttgtcttattctgtgagttgtctctatcactaaatctggtagagcaattattttgtcttctt 21391270  T

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Target: scaffold0002 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 129211 - 129068
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    |||||||||| |||||||||  ||| || ||||  |||||||| || ||||||||| ||| || | |||||| |||||||| |||  |||||||||||||    
T  129211 tacttggatctgagggacccgaaatgcacgtaaatttttgtctaatactgtgagctgtctataccgtagtatttgatagaggagttcttttgtcttcttc 129112  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||||||| |||||||| ||||| | ||| |||||||||||||||    
T  129111 tgtctacgtgtgcaactagacaaatgacctcaagaacaaagaga 129068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 7761 - 7683
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||| ||| ||||||||||||||| ||||||| ||||||  ||||||||||||| ||||||||||||||    
T  7761 tggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 7683  T

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Target: scaffold0115 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 21908 - 21830
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    |||||||||||||| ||| ||||||||||||||| ||||||| ||||||  ||||||||||||| ||||||||||||||    
T  21908 tggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 21830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 7566 - 7454
Alignment:
Q  21 gctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttct 120  Q
    ||||| |||||| |||||||| |||||||| ||||| ||||||||||||||||||| | ||||||||| |  ||| | ||||| ||| |||||||||| |    
T  7566 gctacatggatctgagggacctagaatccacgtaagtttttgtcttattctgtgagttgtctctatcagaccatccggtagagcagttattttgtctttt 7467  T
Q  121 tctgtctacatgt 133  Q
    || ||||||||||    
T  7466 tccgtctacatgt 7454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 12278 - 12232
Alignment:
Q  27 tggatcagagggacccagaatccatgtaagcttttgtcttattctgt 73  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||||    
T  12278 tggatctgagggacccaaaatccacgtaagcttttgtcttattctgt 12232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 26618 - 26515
Alignment:
Q  59 tttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaa 158  Q
    |||||||||||||||||  |||| ||||| |||||| | |||||| ||| ||||||||||||||| ||||| ||||||| |||||| || || |||||||    
T  26618 tttgtcttattctgtgaattatccctatcgtagtatgttatagagcagttattttgtcttcttctatctacgtgtgcaaacagacaaagtacctcaagaa 26519  T
Q  159 caaa 162  Q
    ||||    
T  26518 caaa 26515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 1568 - 1677
Alignment:
Q  59 tttgtcttattctgtgagctatctctat--catagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaag 156  Q
    ||||||||||| ||||| ||||| ||||  ||||||||||||||||| |||   ||||||||||| ||||||| ||||||| || ||| || || |||||    
T  1568 tttgtcttattatgtgaactatccctatatcatagtatctgatagagtagtttgtttgtcttcttttgtctacgtgtgcaaacaaacaaagaacctcaag 1667  T
Q  157 aacaaagaga 166  Q
    ||||||||||    
T  1668 aacaaagaga 1677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 7161 - 7238
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatat 312  Q
    ||||||| |||||| |||  |||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||    
T  7161 tggatatagatagggtacgaatttcatatttatctaacg-agcggatacagatatcacactatctgcatccatggatat 7238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 66439 - 66366
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatgga 309  Q
    ||||||||||||   |||||||||||||| ||||| ||||| |||||| ||||||||||||| |||||||||||    
T  66439 gatatggatagggctcagatttcatatttgtccaatggagctgacacaaatatcacactatccgcatccatgga 66366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 397 - 492
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctac 129  Q
    |||||||| |||||||| ||||  |||||||||||||||| |||| ||||||| |  | |||||  |||| ||  |||||||||||||||||||||    
T  397 gagggacctagaatccacgtaacattttgtcttattctgtaagctgtctctataactgcatctggcagagcagctattttgtcttcttctgtctac 492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 8460 - 8555
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctac 129  Q
    |||||||| |||||||| ||||  |||||||||||||||| |||| ||||||| |  | |||||  |||| ||  |||||||||||||||||||||    
T  8460 gagggacctagaatccacgtaacattttgtcttattctgtaagctgtctctataactgcatctggcagagcagctattttgtcttcttctgtctac 8555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 79509 - 79415
Alignment:
Q  35 agggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctac 129  Q
    ||||||| |||||||| |||||||||| ||||||| ||| |  | |||||||||| | ||||| ||||  |   |||||||||||||||||||||    
T  79509 agggacctagaatccacgtaagcttttctcttattatgttaattgtctctatcattgcatctggtagaacaactattttgtcttcttctgtctac 79415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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