View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_114 (Length: 325)
Name: NF10140A_low_114
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_114 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 31557021 - 31557330
Alignment:
| Q |
9 |
accatagacatcgacataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31557021 |
accacagacatcgacataaaaggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaat |
31557120 |
T |
|
| Q |
109 |
ttacaatgccccactttgtaataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31557121 |
ttacaatgccccactttgtaataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaa |
31557220 |
T |
|
| Q |
209 |
agatgctcgcaccttcaatccatggagatggcaggtacatgattagnnnnnnnattattgctgatctaattaatgttatgttgagttacactgcactctt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31557221 |
agatgctcgcaccttcaatccatggagatggcaggtacatgattag-ttttttattattgctgatctaattaatgttatgttgagttacactacactctt |
31557319 |
T |
|
| Q |
309 |
cagttgcttat |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
31557320 |
cagttgcttat |
31557330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 35478967 - 35479046
Alignment:
| Q |
166 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
245 |
Q |
| |
|
|||||||||||||||| || ||| | || || || |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35478967 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggta |
35479046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University