View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_115 (Length: 324)
Name: NF10140A_low_115
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_115 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 2842841 - 2842536
Alignment:
| Q |
19 |
cttataagaagggaaagggagaatcnnnnnnnggaaaaggaacttgaaacttataggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcag |
118 |
Q |
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| T |
2842841 |
cttataagaagggaaagggaaaatctttttttggaaaaggaacttgaaacttttaggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcag |
2842742 |
T |
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| Q |
119 |
cagaggtgcggcttagtgaatggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacctattgttaagca |
218 |
Q |
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| T |
2842741 |
cagaggtgcggcttagtgaatggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacttattgttaagca |
2842642 |
T |
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| Q |
219 |
agattgtacgaataatacagaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgag |
318 |
Q |
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| T |
2842641 |
agattgtaccaataatacagaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgag |
2842542 |
T |
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| Q |
319 |
tctgat |
324 |
Q |
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|||||| |
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| T |
2842541 |
tctgat |
2842536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 2838590 - 2838510
Alignment:
| Q |
244 |
gaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctgat |
324 |
Q |
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| T |
2838590 |
gaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtctgat |
2838510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 2838679 - 2838645
Alignment:
| Q |
155 |
cactttcatttgaaacatgtgatgatccatcacag |
189 |
Q |
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| T |
2838679 |
cactttcatttgaaacttgtgatgatccatcacag |
2838645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 2838740 - 2838683
Alignment:
| Q |
19 |
cttataagaagggaaagggagaatcnnnnnnnggaaaaggaacttgaaacttataggc |
76 |
Q |
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| T |
2838740 |
cttataagaagggaaaaggagaatctctttttggaaaaggaacttgaaagttataggc |
2838683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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