View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_117 (Length: 323)

Name: NF10140A_low_117
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_117
NF10140A_low_117
[»] chr2 (8 HSPs)
chr2 (6-312)||(2466645-2466930)
chr2 (59-312)||(2462597-2462832)
chr2 (186-312)||(3063274-3063400)
chr2 (176-310)||(2458023-2458154)
chr2 (179-310)||(2469972-2470100)
chr2 (182-312)||(2474241-2474368)
chr2 (213-289)||(2471017-2471090)
chr2 (251-312)||(2486515-2486576)
[»] chr4 (1 HSPs)
chr4 (186-312)||(18015920-18016046)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 312
Target Start/End: Complemental strand, 2466930 - 2466645
Alignment:
Q  6 acattattttattatactccaataatacgagaaatgtcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccat 105  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2466930 acattattttattatactccaataatatgagaaatatcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccat 2466831  T
Q  106 ttatttatttatttatccatcatatggtatggtttctatatatagcttaaattgaaacattctattaagcatgcacttagtatggcttttcaccaacata 205  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||                |||||||||||||||||||||||   |    
T  2466830 ttatttatttatttatccatcatatggtatggtttcta--tatagcttaaagtgaaa----------------cacttagtatggcttttcaccaa---a 2466752  T
Q  206 gttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2466751 gttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacc 2466652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 59 - 312
Target Start/End: Complemental strand, 2462832 - 2462597
Alignment:
Q  59 atataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttatttatttatccatcatatggtatggtttctatatatagcttaaatt 158  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||| |    
T  2462832 atataatgagtcaagaactcattacgtacatacgtttaccctgcaatttatttatttatttatccatcatatggtatggtttctatata--gcttaaagt 2462735  T
Q  159 gaaacattctattaagcatgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcac 258  Q
    ||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2462734 gaaaca----------------cttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcac 2462651  T
Q  259 atctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2462650 atctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtat 2462597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 3063274 - 3063400
Alignment:
Q  186 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3063274 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 3063373  T
Q  286 gtgagtttctccaaacaacctgagtat 312  Q
    |||||||||||||||||||||||||||    
T  3063374 gtgagtttctccaaacaacctgagtat 3063400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 2458154 - 2458023
Alignment:
Q  176 atgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacat 275  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||  |||||||||| |||| ||||||   |||||| ||||||||||||    
T  2458154 atgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacat 2458058  T
Q  276 ccaacacgttgtgagtttctccaaacaacctgagt 310  Q
    |||| ||| | || |||||||||||||||||||||    
T  2458057 ccaatacgctttgtgtttctccaaacaacctgagt 2458023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 2470100 - 2469972
Alignment:
Q  179 cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca 278  Q
    ||||||||||||  |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||  |||||   |||| |||||||||||||||||    
T  2470100 cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttatt---acatttcactttggcacatcca 2470004  T
Q  279 acacgttgtgagtttctccaaacaacctgagt 310  Q
    |  ||||||| |||||||||||| ||||||||    
T  2470003 atccgttgtgtgtttctccaaaccacctgagt 2469972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 182 - 312
Target Start/End: Complemental strand, 2474368 - 2474241
Alignment:
Q  182 ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca 281  Q
    |||||||||  |||| |||| ||||||||| || |||||||||||||| |||||||||||||||| |||||   ||||| |||||||||||||||||| |    
T  2474368 ttagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaata 2474272  T
Q  282 cgttgtgagtttctccaaacaacctgagtat 312  Q
    |||| || |||||||||||| ||||||||||    
T  2474271 cgttttgtgtttctccaaaccacctgagtat 2474241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 2471090 - 2471017
Alignment:
Q  213 ggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtga 289  Q
    |||||||| |||||||| ||||||||||| |||| |||||   |||||||||||||| |||||||||||||||||||    
T  2471090 ggtgggtcataattgcaagtaatgaatgtgcctccattat---cacatctcactttgccacatccaacacgttgtga 2471017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 2486576 - 2486515
Alignment:
Q  251 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtat 312  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  |||||||||||||||||    
T  2486576 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtat 2486515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 186 - 312
Target Start/End: Complemental strand, 18016046 - 18015920
Alignment:
Q  186 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18016046 tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt 18015947  T
Q  286 gtgagtttctccaaacaacctgagtat 312  Q
    |||||||||||||||||||||||||||    
T  18015946 gtgagtttctccaaacaacctgagtat 18015920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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