View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_118 (Length: 322)

Name: NF10140A_low_118
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_118
NF10140A_low_118
[»] chr4 (4 HSPs)
chr4 (10-322)||(2838500-2838812)
chr4 (193-322)||(2842784-2842913)
chr4 (6-57)||(2842522-2842573)
chr4 (155-189)||(2842671-2842705)


Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 10 - 322
Target Start/End: Original strand, 2838500 - 2838812
Alignment:
Q  10 catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacacttgatccttgtgttgactgttttcctccacctcttctccatggtc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2838500 catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttctccatggtc 2838599  T
Q  110 tgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaaat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2838600 tgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaagt 2838699  T
Q  210 tccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838700 tccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacc 2838799  T
Q  310 tctcatattgtct 322  Q
    |||||||||||||    
T  2838800 tctcatattgtct 2838812  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 2842784 - 2842913
Alignment:
Q  193 gcctataactttcaaattccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc 292  Q
    ||||| || |||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  2842784 gcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagaaac 2842883  T
Q  293 tctttcttcaattaacctctcatattgtct 322  Q
    ||||||||||||||||||||| ||||||||    
T  2842884 tctttcttcaattaacctctcgtattgtct 2842913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 2842522 - 2842573
Alignment:
Q  6 tggacatcaagaacatcagactcagtatcataaaaggatctatgcatatcat 57  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  2842522 tggacatcaagaacatcagactcagtatcataaaaggagctatgcaaatcat 2842573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 2842671 - 2842705
Alignment:
Q  155 ctgtgatggatcatcacaagtttcaaatgaaagtg 189  Q
    |||||||||||||||||| ||||||||||||||||    
T  2842671 ctgtgatggatcatcacatgtttcaaatgaaagtg 2842705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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