View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_123 (Length: 317)

Name: NF10140A_low_123
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_123
NF10140A_low_123
[»] chr4 (10 HSPs)
chr4 (214-317)||(20649987-20650092)
chr4 (123-203)||(20649874-20649955)
chr4 (212-294)||(1745427-1745510)
chr4 (8-57)||(32344703-32344752)
chr4 (212-264)||(18402887-18402941)
chr4 (216-295)||(38011633-38011714)
chr4 (212-268)||(44136802-44136860)
chr4 (212-266)||(25100372-25100428)
chr4 (224-278)||(30257435-30257491)
chr4 (214-268)||(41839740-41839796)
[»] chr2 (7 HSPs)
chr2 (211-294)||(12419511-12419596)
chr2 (211-294)||(12431571-12431656)
chr2 (212-294)||(39228890-39228974)
chr2 (212-279)||(5136179-5136248)
chr2 (223-294)||(4730702-4730775)
chr2 (219-268)||(9848108-9848159)
chr2 (213-294)||(14695081-14695164)
[»] chr7 (6 HSPs)
chr7 (212-294)||(27900311-27900395)
chr7 (214-294)||(28002635-28002718)
chr7 (223-277)||(10019740-10019796)
chr7 (212-277)||(10623342-10623409)
chr7 (212-294)||(16994470-16994554)
chr7 (223-284)||(28302137-28302200)
[»] chr8 (5 HSPs)
chr8 (212-277)||(11954587-11954654)
chr8 (212-277)||(1029727-1029793)
chr8 (216-277)||(41566177-41566240)
chr8 (214-268)||(10659195-10659251)
chr8 (215-251)||(5950154-5950190)
[»] chr6 (6 HSPs)
chr6 (212-264)||(31304021-31304075)
chr6 (212-276)||(3008833-3008899)
chr6 (228-294)||(6257236-6257303)
chr6 (219-264)||(29032697-29032744)
chr6 (216-292)||(6189647-6189725)
chr6 (216-268)||(8210006-8210060)
[»] chr1 (10 HSPs)
chr1 (214-293)||(48563248-48563329)
chr1 (214-268)||(18628967-18629023)
chr1 (214-268)||(50959523-50959579)
chr1 (212-268)||(8326998-8327056)
chr1 (212-244)||(26762256-26762288)
chr1 (212-268)||(33323887-33323945)
chr1 (223-294)||(2688419-2688492)
chr1 (214-268)||(26925118-26925174)
chr1 (212-265)||(15394632-15394687)
chr1 (212-265)||(16256465-16256520)
[»] scaffold0003 (1 HSPs)
scaffold0003 (213-268)||(353236-353293)
[»] chr5 (4 HSPs)
chr5 (211-280)||(18274017-18274088)
chr5 (212-276)||(43168742-43168808)
chr5 (223-278)||(24099433-24099490)
chr5 (214-268)||(12566904-12566960)
[»] chr3 (5 HSPs)
chr3 (215-268)||(47005839-47005894)
chr3 (212-279)||(24405031-24405100)
chr3 (215-296)||(17768059-17768142)
chr3 (215-296)||(19069360-19069443)
chr3 (223-251)||(28180538-28180566)
[»] scaffold0174 (1 HSPs)
scaffold0174 (223-293)||(30582-30654)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 20649987 - 20650092
Alignment:
Q  214 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgatgttgcttcttcaact 311  Q
    |||||||| |||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  20649987 gaaagggtttggttattaacgtattgaactcatccctcaatctgagttcttacgcatctgtttgaaacttgtggtgtttggtgatgttgcttcttcgact 20650086  T
Q  312 ctctga 317  Q
    ||||||    
T  20650087 ctctga 20650092  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 20649874 - 20649955
Alignment:
Q  123 tttcagagattgggtggttttggatgtg-cctcttgtggttcggtttgcgattcatcaatctgaaagggtctgtttgtgttt 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20649874 tttcagagattgggtggttttggatgtggcctcttgtggttcggtttgcgattcatcaacctgaaagggtctgtttgtgttt 20649955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 1745427 - 1745510
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 294  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||| || ||||| ||| ||||||||||    
T  1745427 ccgaaagggtctggttactaacgtattggactcatccctcaatctgagttcttacgcgtctcttggaaac-tgttgtgtttggtg 1745510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 32344752 - 32344703
Alignment:
Q  8 tagagtttgggtaatctttatgattattattatgtgataaaagttatcca 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32344752 tagagtttgggtaatctttatgattattattatgtgataaaagttatcca 32344703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 18402941 - 18402887
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttac 264  Q
    ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  18402941 ccgaaagggtctggttactaacgtattgaactcatccatcgatctgagttcttac 18402887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 38011714 - 38011633
Alignment:
Q  216 aagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtga 295  Q
    |||||||||||||||||||||||| |||||||||||  ||||| |||||||| ||  ||||||| || || |||||||||||    
T  38011714 aagggtctggttactaacgtattggactcatccctcgatctgaattcttacgtgtaggtttgaagctggttgtgtttggtga 38011633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 44136802 - 44136860
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    ||||||||||||||||||| |||||||| |||||||||||  || ||||||||||||||    
T  44136802 ccgaaagggtctggttactgacgtattggactcatccctcgatccgagttcttacgcgt 44136860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 25100372 - 25100428
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgc 266  Q
    |||||||||||||||| || ||||||||||||||||||||  |||||||| ||||||    
T  25100372 ccgaaagggtctggttgctgacgtattgaactcatccctcgatctgagtttttacgc 25100428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 30257435 - 30257491
Alignment:
Q  224 ggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaa 278  Q
    ||||| ||||||||||||||||||||||  |||||||| ||||||||| | ||||||    
T  30257435 ggttattaacgtattgaactcatccctcgatctgagtttttacgcgtcagattgaaa 30257491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 41839796 - 41839740
Alignment:
Q  214 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    |||||||||| |||||| |||||||| |||||||||||  |||||||||||| ||||    
T  41839796 gaaagggtcttgttactgacgtattggactcatccctcgatctgagttcttatgcgt 41839740  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 12419596 - 12419511
Alignment:
Q  211 tccgaaagggtctggttactaacgtattgaactcatccct--ctctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 294  Q
    ||||||||||| ||||||||||||||||| ||||||||||   ||||||||||||||||| |||||||||| | | ||||||||||    
T  12419596 tccgaaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtg 12419511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 12431656 - 12431571
Alignment:
Q  211 tccgaaagggtctggttactaacgtattgaactcatccct--ctctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 294  Q
    ||||||||||| ||||||||||||||||| ||||||||||   ||||||||||||||||| |||||||||| | | ||||||||||    
T  12431656 tccgaaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtg 12431571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 39228890 - 39228974
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 294  Q
    |||||||| ||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||  | ||||||||||    
T  39228890 ccgaaaggttctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtctgtctgaaactgcttgtgtttggtg 39228974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 5136179 - 5136248
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaac 279  Q
    |||||||||| ||| || |||||||||| |||||||||||  |||||||||||||||||||||| |||||    
T  5136179 ccgaaagggtttggctattaacgtattggactcatccctcgatctgagttcttacgcgtctgttggaaac 5136248  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 4730702 - 4730775
Alignment:
Q  223 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 294  Q
    ||||||||||||||||| ||||||||| |  |||||||||| ||||||| | ||| ||||||| ||||||||||    
T  4730702 tggttactaacgtattggactcatcccacgatctgagttctaacgcgtcagattgtaacttgttgtgtttggtg 4730775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 9848108 - 9848159
Alignment:
Q  219 ggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    |||||||||||| |||||||| |||||||||||  |||||||||||||||||    
T  9848108 ggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgt 9848159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 14695164 - 14695081
Alignment:
Q  213 cgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 294  Q
    ||||||||||| ||||||||||||||| ||| ||| |||  ||| |||||||||| || ||| |||||| |||  |||||||||    
T  14695164 cgaaagggtctagttactaacgtattggacttatcactcgatctaagttcttacgagtatgtatgaaacatgttctgtttggtg 14695081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 27900395 - 27900311
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 294  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||||||||| ||| |||||||||| ||  ||||||||||    
T  27900395 ccgaaagggtctggttactaacatattggactcatccctcgatctgagttcttacacgtatgtttgaaacctgctgtgtttggtg 27900311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 28002635 - 28002718
Alignment:
Q  214 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacg-cgtctgtttgaaacttgtggtgtttggtg 294  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||  ||||||||||| || || ||||||||||    
T  28002635 gaaagggtctggttattaacgtattgaactcatccctcgatctgagttcttacgatgtctgtttgaatctcgttgtgtttggtg 28002718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 10019796 - 10019740
Alignment:
Q  223 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaa 277  Q
    ||||||||||||||||| |||||||||||  | |||||||||||||||||| |||||    
T  10019796 tggttactaacgtattggactcatccctcgatttgagttcttacgcgtctgattgaa 10019740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 10623342 - 10623409
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaa 277  Q
    |||| ||||| ||||||||||||||||| |||||||||||  |||||||||| |||| | ||||||||    
T  10623342 ccgatagggtttggttactaacgtattggactcatccctcgatctgagttctaacgcatttgtttgaa 10623409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 16994470 - 16994554
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 294  Q
    ||||||||||||| ||||||   ||||| |||| |||||   |||||||||||||| || |||||||| ||||| ||||||||||    
T  16994470 ccgaaagggtctgattactagtttattggactcgtcccttgatctgagttcttacgtgtatgtttgaatcttgttgtgtttggtg 16994554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 28302200 - 28302137
Alignment:
Q  223 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtg 284  Q
    ||||||||||||||||| |||||||||||  |||| |||||||||| |||| || |||| ||||    
T  28302200 tggttactaacgtattggactcatccctcgatctgtgttcttacgcatctgattaaaacatgtg 28302137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 11954654 - 11954587
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccct--ctctgagttcttacgcgtctgtttgaa 277  Q
    ||||||||||||||||| |||||||||| ||||||||||   ||||||||||||||||||||||||||    
T  11954654 ccgaaagggtctggttattaacgtattggactcatccctggatctgagttcttacgcgtctgtttgaa 11954587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 1029793 - 1029727
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaa 277  Q
    ||||||||||||| |||||||||||||| ||||||||| |  ||||||||||||||||| ||||||||    
T  1029793 ccgaaagggtctg-ttactaacgtattggactcatcccacgatctgagttcttacgcgtatgtttgaa 1029727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 41566177 - 41566240
Alignment:
Q  216 aagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaa 277  Q
    |||||||||||||||||||||||  ||||||||| |  ||||||||||||||||| ||||||||    
T  41566177 aagggtctggttactaacgtattagactcatcccacgatctgagttcttacgcgtatgtttgaa 41566240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 10659251 - 10659195
Alignment:
Q  214 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    ||||| |||||||| || |||||||| |||||||||||  |||||||||||||||||    
T  10659251 gaaagagtctggttgctgacgtattggactcatccctcgatctgagttcttacgcgt 10659195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 5950190 - 5950154
Alignment:
Q  215 aaagggtctggttactaacgtattgaactcatccctc 251  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  5950190 aaagggtttggttactgacgtattgaactcatccctc 5950154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 31304021 - 31304075
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttac 264  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  31304021 ccgaaagggtctggttactgacgtattgaactcatccctcgatctgagttcttac 31304075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 3008899 - 3008833
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttga 276  Q
    |||||||||||||||||||||||||||  |||||||| ||  ||||||||||||| ||| |||||||    
T  3008899 ccgaaagggtctggttactaacgtattagactcatccttcgatctgagttcttacacgtatgtttga 3008833  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 6257236 - 6257303
Alignment:
Q  228 actaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 294  Q
    |||||| ||||| |||||||||||  ||||||||||||||||| |||||||||| ||| ||||||||||    
T  6257236 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaaac-tgttgtgtttggtg 6257303  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 29032697 - 29032744
Alignment:
Q  219 ggtctggttactaacgtattgaactcatccctc--tctgagttcttac 264  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||    
T  29032697 ggtctggttactaacgtattggactcatccctcgatctgagttcttac 29032744  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 6189647 - 6189725
Alignment:
Q  216 aagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttgg 292  Q
    ||||| ||||||||||| |||||| |||||||||||  ||| | |||||| || |||||||||||||| | ||||||||    
T  6189647 aagggcctggttactaatgtattggactcatccctcgatctaaattcttaggcatctgtttgaaactttttgtgtttgg 6189725  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 8210006 - 8210060
Alignment:
Q  216 aagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    |||| ||||||||||||| ||||| |||||||||||  |||||||||||||||||    
T  8210006 aaggttctggttactaacttattggactcatccctcgatctgagttcttacgcgt 8210060  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 48563248 - 48563329
Alignment:
Q  214 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggt 293  Q
    |||||||||||||||||||| ||||| ||||||||| |  ||| ||||||||||||| |||||||| || || |||||||||    
T  48563248 gaaagggtctggttactaacatattggactcatcccacgatctaagttcttacgcgtatgtttgaatctagttgtgtttggt 48563329  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 18629023 - 18628967
Alignment:
Q  214 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    ||||||||||||||||| |||||||| |||||||||||  |||||||||||||||||    
T  18629023 gaaagggtctggttactgacgtattggactcatccctcaatctgagttcttacgcgt 18628967  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 50959579 - 50959523
Alignment:
Q  214 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    ||||||||||||||||| |||||||| |||||||||||  |||||||||||||||||    
T  50959579 gaaagggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgt 50959523  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 8327056 - 8326998
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    |||||||||||||||| || ||||||||||||||||||||  |||||||| ||||||||    
T  8327056 ccgaaagggtctggtttctgacgtattgaactcatccctcgatctgagtttttacgcgt 8326998  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 26762256 - 26762288
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactc 244  Q
    |||||||||||||||||||||||||||||||||    
T  26762256 ccgaaagggtctggttactaacgtattgaactc 26762288  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 33323887 - 33323945
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    |||||||||| |||||| | |||||||| |||||||||||  |||||||||||||||||    
T  33323887 ccgaaagggtatggttaatgacgtattggactcatccctcgatctgagttcttacgcgt 33323945  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 2688492 - 2688419
Alignment:
Q  223 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtg 294  Q
    ||||||||||||||||| ||||||||| |  |||||||||| |||| || | ||| ||||||| ||||||||||    
T  2688492 tggttactaacgtattggactcatcccacgatctgagttctaacgcatcagattgtaacttgttgtgtttggtg 2688419  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 26925174 - 26925118
Alignment:
Q  214 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    |||||||| |||||||| | |||||| |||||||||||  |||||||||||||||||    
T  26925174 gaaagggtatggttactgatgtattggactcatccctcgatctgagttcttacgcgt 26925118  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 15394632 - 15394687
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacg 265  Q
    |||||||| |||||||||||| |||||| || ||||||||  ||||||||||||||    
T  15394632 ccgaaaggatctggttactaatgtattggacgcatccctcgatctgagttcttacg 15394687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 16256465 - 16256520
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacg 265  Q
    ||||||||||||| || || |||||||| |||||||||||  ||||||||||||||    
T  16256465 ccgaaagggtctgtttgctgacgtattggactcatccctcgatctgagttcttacg 16256520  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 353293 - 353236
Alignment:
Q  213 cgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    |||||||||||||||||| || ||||| |||||||||||  |||||||||||||||||    
T  353293 cgaaagggtctggttactgacatattggactcatccctcgatctgagttcttacgcgt 353236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 18274017 - 18274088
Alignment:
Q  211 tccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaact 280  Q
    |||||||||||||||||||||||  |||| ||||||| |||  || ||||| |||||||| |||||||||||    
T  18274017 tccgaaagggtctggttactaacacattggactcatcactcgatcagagtttttacgcgtatgtttgaaact 18274088  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 43168808 - 43168742
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttga 276  Q
    ||||||| |||||||| ||||||||||  |||||||||||  | |||||||||||| ||||||||||    
T  43168808 ccgaaagagtctggttgctaacgtattagactcatccctcaatttgagttcttacgtgtctgtttga 43168742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 24099433 - 24099490
Alignment:
Q  223 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaa 278  Q
    |||||| ||||||||||||||||||||||  |||||||| ||||||||| | ||||||    
T  24099433 tggttattaacgtattgaactcatccctcgatctgagtttttacgcgtcggattgaaa 24099490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 12566904 - 12566960
Alignment:
Q  214 gaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    ||||||| |||||| || ||||||||||||||||||||  |||||||| ||||||||    
T  12566904 gaaagggcctggtttctgacgtattgaactcatccctcgatctgagtttttacgcgt 12566960  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 47005894 - 47005839
Alignment:
Q  215 aaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgt 268  Q
    |||||||||||||||| |||||||| |||||||||||  ||| |||||||||||||    
T  47005894 aaagggtctggttactgacgtattggactcatccctcgatcttagttcttacgcgt 47005839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 24405031 - 24405100
Alignment:
Q  212 ccgaaagggtctggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaac 279  Q
    |||||||||| |||||| |||||||||| ||||||| |||  ||  |||||||||||||||||| |||||    
T  24405031 ccgaaagggtttggttattaacgtattggactcatctctcgatcatagttcttacgcgtctgttggaaac 24405100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 17768142 - 17768059
Alignment:
Q  215 aaagggtctggttacta-acgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgat 296  Q
    ||||||||||||||||| || ||||||||| |||||||  |||||||||||| |||||| |||| || | || ||||||||||||    
T  17768142 aaagggtctggttactatacctattgaactaatccctcgatctgagttcttatgcgtct-tttggaaatcgttgtgtttggtgat 17768059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 19069443 - 19069360
Alignment:
Q  215 aaagggtctggttacta-acgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggtgat 296  Q
    ||||||||||||||||| || ||||||||| |||||||  |||||||||||| |||||| |||| || | || ||||||||||||    
T  19069443 aaagggtctggttactatacctattgaactaatccctcgatctgagttcttatgcgtct-tttggaaatcgttgtgtttggtgat 19069360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 251
Target Start/End: Complemental strand, 28180566 - 28180538
Alignment:
Q  223 tggttactaacgtattgaactcatccctc 251  Q
    |||||||||||||||||||||||||||||    
T  28180566 tggttactaacgtattgaactcatccctc 28180538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 30582 - 30654
Alignment:
Q  223 tggttactaacgtattgaactcatccctc--tctgagttcttacgcgtctgtttgaaacttgtggtgtttggt 293  Q
    ||||||||||||||||| ||||||||| |  | |||||||| ||||||| | ||| ||||||| |||||||||    
T  30582 tggttactaacgtattggactcatcccacgatatgagttctaacgcgtcagattgtaacttgttgtgtttggt 30654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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