View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_124 (Length: 315)
Name: NF10140A_low_124
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_124 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 42292609 - 42292307
Alignment:
| Q |
1 |
aaattaagaataaacaaacaacttgttccgtactttatcaatttgttcacatatatagcctacgagttattaaaatcaactagaagatctttaaactatg |
100 |
Q |
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||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42292609 |
aaattaagaataaacaatcaacttgttccttaaactatcaattttttcacatatatagccttcgagttattaaaatcaactagaagatctttaaactata |
42292510 |
T |
|
| Q |
101 |
aaaaatatatcaatttagtccataaaccatcatnnnnnnnnnttaactttgtcaaccaaggggctaatagttatatgtgagaatagttttggtacttttt |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42292509 |
aaaaatatatcaatttagtccataaaccatcataaaaaaaa-ttaactttgtcaaccaaggggctaatagttatatgtgagaatagtttaggtacttttt |
42292411 |
T |
|
| Q |
201 |
agttaattttaatagcttaatgatgaaattgatgagagaatgatagttgtttttaagtaaggtatacaaacctctcaaaaacaaagtag-ttaactgtga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42292410 |
agttaattttaatagcttaatgatgaaattgatgagagaatgatagttgtttttaagtaaggtatacaaacctctcaaaaacaaagtagtttaactgtga |
42292311 |
T |
|
| Q |
300 |
gaga |
303 |
Q |
| |
|
|||| |
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|
| T |
42292310 |
gaga |
42292307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 14463085 - 14463020
Alignment:
| Q |
68 |
tattaaaatcaactagaagatctttaaactatgaaaaatatatcaatttagtccataaaccatcat |
133 |
Q |
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|||| |||||||||| || | ||||||||||||| ||||| || ||||||||||||||| ||||| |
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| T |
14463085 |
tattcaaatcaactaaaataactttaaactatgataaatacatttatttagtccataaactatcat |
14463020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 12607261 - 12607323
Alignment:
| Q |
68 |
tattaaaatcaactagaagatctttaaactatgaaaaatatatcaatttagtccataaaccat |
130 |
Q |
| |
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||||||||||||||| ||| | |||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
12607261 |
tattaaaatcaactaaaaggttcataaactatgaaaaatacatcaatttagtccctaaaccat |
12607323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 40305809 - 40305756
Alignment:
| Q |
68 |
tattaaaatcaactagaagatctttaaactatgaaaaatatatcaatttagtcc |
121 |
Q |
| |
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||||||||| || || ||||||||||||||||| |||||| ||||||||||||| |
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|
| T |
40305809 |
tattaaaattaattaaaagatctttaaactatggaaaataaatcaatttagtcc |
40305756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 421802 - 421744
Alignment:
| Q |
68 |
tattaaaatcaactagaagatctttaaactatgaaaaatatatcaatttagtccataaa |
126 |
Q |
| |
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||||||||||||||| ||||| ||||||||| |||||| ||||||||||||| |||| |
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|
| T |
421802 |
tattaaaatcaactaagagatccctaaactatggaaaatacatcaatttagtccctaaa |
421744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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