View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_128 (Length: 311)
Name: NF10140A_low_128
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_128 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 33905241 - 33905545
Alignment:
| Q |
1 |
tggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaaggaaggtgatgctgttcaaatgatttggcaggctg |
100 |
Q |
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| T |
33905241 |
tggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaaggaaggtgatgctgttgaaatgatttggcaagctg |
33905340 |
T |
|
| Q |
101 |
tttcacgtaaggttccttttatgaagttgaaaacaaacaggtctaggagattttttagagccctttatggtaataataaatataaggggcataaatcaat |
200 |
Q |
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| T |
33905341 |
tttcacgtaaggttccttttatgaagttgaaaacaaacaggtctaggagattttttagagccctttatggtaataataaatataaggggcataaatcaat |
33905440 |
T |
|
| Q |
201 |
acatgcaccacctaatttttggtgatattggtacatgaagttttgtctttagaaattcaagaatctttttatatacaatatagttatgattttgatagtg |
300 |
Q |
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| T |
33905441 |
acatgcaccacctaatttttggtgatattggtacatgaagttttgtctttagaaattcaagaatgtttttatatacaatatagttatgattttgatagtg |
33905540 |
T |
|
| Q |
301 |
aaatt |
305 |
Q |
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||||| |
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| T |
33905541 |
aaatt |
33905545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 9326358 - 9326228
Alignment:
| Q |
1 |
tggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaaggaaggtgatgctgttcaaatgatttggcaggctg |
100 |
Q |
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||||||| ||||||||||| |||||||| |||||| | |||||||||| | | || || |||||||||||||||||||| |||||||||||||| |||| |
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| T |
9326358 |
tggacaaaaatgtggaacaagttgaaagaggttgaacatttctttgaatataattttccatctaaggaaggtgatgctgtacaaatgatttggcaagctg |
9326259 |
T |
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| Q |
101 |
tttcacgtaaggttccttttatgaagttgaa |
131 |
Q |
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|||||| ||| ||||||| |||||| ||||| |
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| T |
9326258 |
tttcacataaagttccttctatgaaattgaa |
9326228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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