View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_13 (Length: 453)
Name: NF10140A_low_13
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 45099027 - 45099444
Alignment:
| Q |
19 |
acatcaaagtaaagcaagttgagcgaagtactaacaatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45099027 |
acatcaaagtaaagcaagttgagcgaagtactaacaatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatg |
45099126 |
T |
|
| Q |
119 |
ttatattaaaccttgaagctaaacttgagttttccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctccctt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45099127 |
ttatattaaaccttgaagctaaacttgagttttccctattcatctgttgagcagtcatgtaaacattttcaggcgcgatctctggagtagcacctccctt |
45099226 |
T |
|
| Q |
219 |
ctggtaatcaggtgtatgagtgcttactgcatgtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagtcctccaaagggtatcatta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
45099227 |
ctggtaatcaggtgtatgagtgcttactgcatgtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtgtcatta |
45099326 |
T |
|
| Q |
319 |
aaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaacca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45099327 |
aaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacctgagatgaaagatttctatactcttccacaccagaaggaccaacca |
45099426 |
T |
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| Q |
419 |
accttgttccataatcta |
436 |
Q |
| |
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|||||||||||||||||| |
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| T |
45099427 |
accttgttccataatcta |
45099444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 17348993 - 17348638
Alignment:
| Q |
19 |
acatcaaagtaaagcaagttgagcgaagtactaacaatatcacaaaaatgcaaccgaatcaaatgtgaaacgccatcacgagccacaggaaaattccatg |
118 |
Q |
| |
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||||||||||| | ||| || || |||| |||||||||||| || ||||||||||||| | |||| ||| ||| | | |||| | ||||||||||| |
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| T |
17348993 |
acatcaaagtataacaaattaagagaaggactaacaatatcgcagaaatgcaaccgaacaagatgtcgaacaccaatagaatccactgaaaaattccatg |
17348894 |
T |
|
| Q |
119 |
ttatattaaaccttgaagctaaacttgagtttt---ccctattcatctgttgagcagtcatgtaaacattttcaggtgcgatctctggagtagcacctcc |
215 |
Q |
| |
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|||| || || |||||||||| | || || | |||||||||||| ||||||||||| |||||| | || || ||||||||| || || || || |
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| T |
17348893 |
ttatgttgaattgtgaagctaaaatggaattatgatccctattcatctcctgagcagtcatataaacactatccggcgcgatctctctagccgcgccccc |
17348794 |
T |
|
| Q |
216 |
cttctggtaatcaggtgtatgagtgcttactgcatgtttagctgcttccttaaaaaccaaataatcctcatcaggaatccaagtcctccaaagggtatca |
315 |
Q |
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||||| ||||| ||||| |||||||| ||| || |||||||| ||||||||||||| | |||||| |||||||||||| || ||||||||||||||| |
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| T |
17348793 |
tttctgataatctggtgtgtgagtgctcactacagccttagctgcatccttaaaaaccagaaaatccttatcaggaatccatgttctccaaagggtatca |
17348694 |
T |
|
| Q |
316 |
ttaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaac |
371 |
Q |
| |
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||||||||||||| ||| |||||| |||||||||||||||| |||||| ||||| |
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|
| T |
17348693 |
ttaaaaggagttaatttttcacctccaacattaatcctatgaatagtttctaaaac |
17348638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 17363945 - 17363885
Alignment:
| Q |
312 |
atcattaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacc |
372 |
Q |
| |
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||||||||| ||||||||||||| ||| | || ||||||||||||| |||||| |||||| |
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| T |
17363945 |
atcattaaagggagttattttcaaaccatcaacgttaatcctatgaatagtttctaaaacc |
17363885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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